Variant report

Variant	rs1492906
Chromosome Location	chr1:172712707-172712708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11581258	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11587368	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11589360	0.80[EUR][1000 genomes]
rs11810529	0.80[EUR][1000 genomes]
rs12117891	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12136885	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12731355	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12760147	0.80[EUR][1000 genomes]
rs17370861	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2172399	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34789243	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56298311	0.80[EUR][1000 genomes]
rs57349684	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs974856	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172711400-172714000	Weak transcription	Primary T cells from cord blood	blood
2	chr1:172712000-172712800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr1:172712000-172712800	Enhancers	NHLF	lung
4	chr1:172712000-172714000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr1:172712000-172714000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr1:172712000-172716400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:172712000-172716400	Enhancers	HMEC	breast
8	chr1:172712000-172717000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:172712200-172712800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:172712200-172712800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:172712200-172716400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:172712400-172714000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:172712400-172714400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:172712600-172714000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr1:172712600-172714000	Weak transcription	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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