Variant report

Variant	rs149293
Chromosome Location	chr6:80683573-80683574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1355576	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1512120	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs151586	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs151674	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1818439	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs239545	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs239546	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs239547	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs239550	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs239551	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4706822	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6915142	1.00[CEU][hapmap];0.80[CHB][hapmap];0.95[GIH][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6918121	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6939120	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9343951	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9350836	0.89[EUR][1000 genomes]
rs9352787	0.93[EUR][1000 genomes]
rs9361576	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1032347	chr6:80284809-80694778	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv965652	chr6:80663704-80688769	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80682600-80687800	Weak transcription	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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