Variant report

Variant	rs1495133
Chromosome Location	chr3:23322679-23322680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1027380	0.97[ASN][1000 genomes]
rs11707450	0.85[YRI][hapmap]
rs11711630	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11715035	0.91[YRI][hapmap]
rs11715107	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13087416	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13095887	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1390083	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1495134	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1552931	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1692619	0.91[YRI][hapmap]
rs1695180	0.85[YRI][hapmap]
rs17342342	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17402378	0.91[YRI][hapmap]
rs1874234	0.85[YRI][hapmap]
rs1874502	0.82[YRI][hapmap]
rs1874503	0.85[YRI][hapmap]
rs2036044	0.85[YRI][hapmap]
rs2036045	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs2047340	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2055155	0.93[CHB][hapmap];0.85[JPT][hapmap];0.85[YRI][hapmap];0.89[ASN][1000 genomes]
rs2055156	0.91[YRI][hapmap]
rs2088129	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2101811	0.85[YRI][hapmap]
rs2132145	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2132147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132148	0.84[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2132149	0.83[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2201481	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2201484	0.85[YRI][hapmap]
rs2359760	0.85[EUR][1000 genomes]
rs2359761	0.85[YRI][hapmap]
rs36073188	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4293660	0.89[ASN][1000 genomes]
rs4334589	0.93[ASN][1000 genomes]
rs4858063	0.83[YRI][hapmap]
rs4858065	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4858066	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4858070	0.83[YRI][hapmap]
rs4858488	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4858490	0.89[YRI][hapmap]
rs4858495	0.85[YRI][hapmap]
rs4858498	1.00[CEU][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4858499	0.82[YRI][hapmap]
rs4858507	0.82[YRI][hapmap]
rs5023615	0.84[YRI][hapmap]
rs6550751	0.87[AMR][1000 genomes]
rs6550760	0.91[YRI][hapmap]
rs6769959	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6790185	0.96[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6790327	0.85[YRI][hapmap]
rs6799861	0.83[ASN][1000 genomes]
rs6801824	0.85[YRI][hapmap]
rs6806387	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73149661	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7618910	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7629327	0.93[CHB][hapmap];0.84[JPT][hapmap];0.93[YRI][hapmap];0.95[ASN][1000 genomes]
rs7635882	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636532	0.89[ASN][1000 genomes]
rs7643705	0.85[YRI][hapmap]
rs7648425	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.97[ASN][1000 genomes]
rs778463	0.91[YRI][hapmap]
rs778493	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs778497	0.91[YRI][hapmap]
rs903519	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs931609	0.91[YRI][hapmap]
rs9757330	0.85[YRI][hapmap]
rs9758590	0.85[YRI][hapmap]
rs9815299	0.91[YRI][hapmap]
rs9826103	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9836135	0.88[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9840015	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9844558	1.00[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9848331	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[ASN][1000 genomes]
rs9848389	0.83[YRI][hapmap]
rs9875910	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv589948	chr3:23287141-23390221	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004417	chr3:23318797-23389422	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23298800-23336600	Weak transcription	Thymus	Thymus
2	chr3:23314400-23330400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:23316800-23328000	Weak transcription	Primary B cells from cord blood	blood
4	chr3:23317000-23324400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:23317600-23324800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:23321000-23322800	Enhancers	Brain Hippocampus Middle	brain
7	chr3:23321000-23329800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:23321600-23323000	Enhancers	Brain Cingulate Gyrus	brain
9	chr3:23321600-23332600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:23322000-23322800	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr3:23322000-23322800	Weak transcription	Ovary	ovary
12	chr3:23322400-23322800	Enhancers	Brain Anterior Caudate	brain
13	chr3:23322600-23323400	Weak transcription	Brain Substantia Nigra	brain
14	chr3:23322600-23330800	Weak transcription	Aorta	Aorta

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