Variant report

Variant	rs149536093
Chromosome Location	chr14:31435610-31435611
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr14:31435533-31437063	HepG2	liver:	n/a	n/a
2	USF1	chr14:31435144-31435863	HCT-116	colon:	n/a	n/a
3	ZNF143	chr14:31435481-31435649	H1-hESC	embryonic stem cell:	n/a	n/a
4	KAP1	chr14:31435415-31435848	HEK293	kidney:	n/a	n/a
5	POLR2A	chr14:31435506-31436256	HCT-116	colon:	n/a	n/a
6	SETDB1	chr14:31435248-31436013	U2OS	brain:	n/a	n/a
7	POLR2A	chr14:31435551-31436164	HCT-116	colon:	n/a	n/a
8	FOS	chr14:31435022-31436004	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31428811..31431049-chr14:31434848..31436931,2	MCF-7	breast:

Variant related genes	Relation type
STRN3	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv901586	chr14:31365884-31465241	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1231	chr14:31424602-31444721	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
5	esv3429977	chr14:31435166-31441360	Weak transcription ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31378000-31439000	Weak transcription	Psoas Muscle	Psoas
2	chr14:31415000-31437200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr14:31416600-31435800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr14:31420200-31464400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr14:31424400-31435800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:31425600-31437000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr14:31425600-31442800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr14:31425600-31443000	Weak transcription	HUVEC	blood vessel
9	chr14:31433000-31437200	ZNF genes & repeats	Fetal Stomach	stomach
10	chr14:31433200-31436400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
11	chr14:31433200-31436600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr14:31433200-31436800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
13	chr14:31433200-31436800	ZNF genes & repeats	Fetal Intestine Large	intestine
14	chr14:31433200-31437200	ZNF genes & repeats	Fetal Muscle Leg	muscle
15	chr14:31433200-31437400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr14:31433200-31437400	ZNF genes & repeats	Fetal Intestine Small	intestine
17	chr14:31433400-31435800	Weak transcription	K562	blood
18	chr14:31433400-31436200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
19	chr14:31433600-31436200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr14:31433600-31436200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr14:31433600-31436200	ZNF genes & repeats	Fetal Brain Female	brain
22	chr14:31433600-31436400	ZNF genes & repeats	Adipose Nuclei	Adipose
23	chr14:31433600-31436400	ZNF genes & repeats	Brain Germinal Matrix	brain
24	chr14:31433600-31436400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
25	chr14:31433600-31436400	ZNF genes & repeats	Fetal Lung	lung
26	chr14:31433600-31437000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
27	chr14:31434000-31436600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
28	chr14:31434200-31436000	Genic enhancers	HepG2	liver
29	chr14:31434400-31436400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
30	chr14:31434400-31436400	Enhancers	HMEC	breast
31	chr14:31434400-31437200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
32	chr14:31434600-31436400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr14:31434600-31439200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr14:31434800-31436600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
35	chr14:31435000-31436200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr14:31435000-31436800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr14:31435200-31435800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr14:31435200-31436000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
39	chr14:31435200-31436000	ZNF genes & repeats	Colon Smooth Muscle	Colon
40	chr14:31435200-31436200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
41	chr14:31435200-31436200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
42	chr14:31435200-31436200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
43	chr14:31435200-31436200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
44	chr14:31435200-31436200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr14:31435200-31436200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr14:31435200-31436200	ZNF genes & repeats	Aorta	Aorta
47	chr14:31435200-31436200	ZNF genes & repeats	Brain Hippocampus Middle	brain
48	chr14:31435200-31436200	ZNF genes & repeats	Brain Substantia Nigra	brain
49	chr14:31435200-31436200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
50	chr14:31435200-31436200	ZNF genes & repeats	Left Ventricle	heart

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