Variant report

Variant	rs1499022
Chromosome Location	chr15:76915620-76915621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1499019	1.00[AMR][1000 genomes]
rs1499020	1.00[AMR][1000 genomes]
rs157764	1.00[AMR][1000 genomes]
rs157765	1.00[AMR][1000 genomes]
rs157767	1.00[AMR][1000 genomes]
rs157770	1.00[AMR][1000 genomes]
rs157771	0.83[AMR][1000 genomes]
rs157772	1.00[AMR][1000 genomes]
rs157773	1.00[AMR][1000 genomes]
rs157774	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs157781	1.00[AMR][1000 genomes]
rs157782	1.00[AMR][1000 genomes]
rs157784	1.00[AMR][1000 genomes]
rs157786	0.94[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs157792	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs157793	1.00[AMR][1000 genomes]
rs166905	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs166932	1.00[AMR][1000 genomes]
rs185860	1.00[AMR][1000 genomes]
rs190782	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs2120112	1.00[AMR][1000 genomes]
rs2404735	1.00[AMR][1000 genomes]
rs2439983	1.00[AMR][1000 genomes]
rs2439987	0.82[AFR][1000 genomes]
rs2459364	1.00[AMR][1000 genomes]
rs2468117	1.00[AMR][1000 genomes]
rs2468125	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2469240	1.00[AMR][1000 genomes]
rs2469243	1.00[AMR][1000 genomes]
rs2516308	1.00[AMR][1000 genomes]
rs2585728	1.00[AMR][1000 genomes]
rs279991	1.00[AMR][1000 genomes]
rs279993	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs279994	1.00[AMR][1000 genomes]
rs279995	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs279998	0.83[AMR][1000 genomes]
rs280004	1.00[AMR][1000 genomes]
rs280019	1.00[AMR][1000 genomes]
rs280035	1.00[AMR][1000 genomes]
rs283786	1.00[AMR][1000 genomes]
rs283788	1.00[AMR][1000 genomes]
rs283790	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs283792	1.00[AMR][1000 genomes]
rs283794	1.00[AMR][1000 genomes]
rs283797	1.00[AMR][1000 genomes]
rs283798	0.83[AMR][1000 genomes]
rs283800	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs284879	1.00[AMR][1000 genomes]
rs284882	1.00[AMR][1000 genomes]
rs284887	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs284888	1.00[AMR][1000 genomes]
rs284889	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs284890	1.00[AMR][1000 genomes]
rs284894	0.83[AMR][1000 genomes]
rs284900	1.00[AMR][1000 genomes]
rs2938694	0.83[AMR][1000 genomes]
rs2938696	1.00[AMR][1000 genomes]
rs2938698	1.00[AMR][1000 genomes]
rs2944379	1.00[AMR][1000 genomes]
rs2948702	1.00[AMR][1000 genomes]
rs2956872	1.00[AMR][1000 genomes]
rs2957558	1.00[AMR][1000 genomes]
rs2957608	1.00[AMR][1000 genomes]
rs3099144	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs3099148	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs3102707	1.00[AMR][1000 genomes]
rs3102711	1.00[AMR][1000 genomes]
rs3102715	0.81[YRI][hapmap]
rs3102718	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs415439	1.00[AMR][1000 genomes]
rs426225	0.83[AMR][1000 genomes]
rs542148	1.00[AMR][1000 genomes]
rs560598	1.00[AMR][1000 genomes]
rs598011	1.00[AMR][1000 genomes]
rs654416	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv904400	chr15:76772062-77085283	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1053924	chr15:76803849-77089079	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv471254	chr15:76811390-76978139	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv570021	chr15:76813920-76978139	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv570022	chr15:76816015-76978139	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
8	nsv904401	chr15:76816015-77085283	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1042089	chr15:76855098-77016127	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
10	nsv904402	chr15:76863023-76930805	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
11	esv2830013	chr15:76863023-77176158	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
12	nsv1042623	chr15:76863437-76999030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1039269	chr15:76863437-77057021	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
14	nsv904403	chr15:76869929-76951040	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
15	nsv904404	chr15:76869929-77033934	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
16	nsv904405	chr15:76869929-77047915	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
17	nsv904406	chr15:76869929-77085283	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
18	nsv904407	chr15:76869929-77121196	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
19	nsv1052133	chr15:76878362-76962756	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
20	esv1815271	chr15:76883346-76930805	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
21	nsv570023	chr15:76884127-76978139	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	nsv904408	chr15:76884127-77085283	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	esv1824106	chr15:76891342-76930805	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
24	nsv1049209	chr15:76891615-76920081	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
25	nsv1046858	chr15:76892097-77020971	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	nsv542440	chr15:76892097-77020971	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
27	nsv1043066	chr15:76892097-77057021	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
28	nsv542441	chr15:76892097-77057021	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
29	nsv1046137	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
30	nsv542442	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
31	nsv904409	chr15:76893186-77033934	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
32	nsv904410	chr15:76893186-77047915	ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
33	nsv904411	chr15:76893186-77085283	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
34	nsv1054164	chr15:76895332-76920081	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
35	nsv570109	chr15:76907376-76978139	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
36	nsv904412	chr15:76910031-77085283	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76882200-76991400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr15:76898400-76981000	Weak transcription	Pancreas	Pancrea
3	chr15:76901000-76917200	Weak transcription	Gastric	stomach
4	chr15:76902600-76992000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:76902800-76926400	Weak transcription	Dnd41	blood
6	chr15:76903400-76940400	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr15:76904000-76927800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:76904400-76923600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr15:76904800-76939800	Weak transcription	Aorta	Aorta
10	chr15:76905000-76941000	Weak transcription	Ovary	ovary
11	chr15:76905800-76915800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr15:76906000-76919000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr15:76906000-76946800	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr15:76906400-76917600	Weak transcription	Thymus	Thymus
15	chr15:76906600-76918600	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr15:76906800-76917400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr15:76907800-76917000	Weak transcription	Fetal Stomach	stomach
18	chr15:76907800-76917800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:76908000-76918200	Weak transcription	Stomach Mucosa	stomach
20	chr15:76908600-76928200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr15:76908800-76928400	Weak transcription	Psoas Muscle	Psoas
22	chr15:76909000-76917400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr15:76909400-76917000	Weak transcription	Fetal Intestine Large	intestine
24	chr15:76909800-76917600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr15:76910000-76917000	Weak transcription	Fetal Muscle Leg	muscle
26	chr15:76910000-76964200	Weak transcription	Brain Hippocampus Middle	brain
27	chr15:76910200-76917200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr15:76910200-76917800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr15:76910200-76918800	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr15:76910200-76919400	Weak transcription	Spleen	Spleen
31	chr15:76910200-76920000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr15:76910200-76926000	Weak transcription	Esophagus	oesophagus
33	chr15:76910200-76941000	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr15:76910200-76959400	Weak transcription	Brain Substantia Nigra	brain
35	chr15:76910400-76917600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr15:76910600-76917600	Weak transcription	Lung	lung
37	chr15:76911400-76990800	Weak transcription	Placenta	Placenta
38	chr15:76911600-76928600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr15:76912400-76917000	Weak transcription	Fetal Intestine Small	intestine
40	chr15:76912400-76918800	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr15:76914000-76916000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr15:76914000-76917000	Weak transcription	Primary T cells from cord blood	blood
43	chr15:76914000-76918000	Weak transcription	Brain Anterior Caudate	brain
44	chr15:76914000-76928200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr15:76914000-76928600	Weak transcription	Liver	Liver
46	chr15:76914000-76939800	Weak transcription	Left Ventricle	heart
47	chr15:76914000-76952600	Weak transcription	Brain Angular Gyrus	brain
48	chr15:76914200-76928600	Weak transcription	Adipose Nuclei	Adipose
49	chr15:76914400-76920000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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