Variant report

Variant	rs149961360
Chromosome Location	chr5:95173506-95173507
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:95168597..95170209-chr5:95172089..95173618,2	K562	blood:
2	chr5:95167615..95170613-chr5:95172553..95174092,2	MCF-7	breast:
3	chr5:94981172..94985318-chr5:95169805..95176246,5	MCF-7	breast:
4	chr5:95158093..95160900-chr5:95173063..95176588,5	MCF-7	breast:
5	chr5:95157133..95161008-chr5:95170364..95173601,6	MCF-7	breast:
6	chr5:95131346..95133321-chr5:95171352..95173975,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175449	Chromatin interaction
ENSG00000173221	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830409	chr5:95006686-95204496	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1015180	chr5:95134357-95286446	Strong transcription Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv882389	chr5:95144952-95173887	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv3425626	chr5:95172396-95175894	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95171000-95175400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:95171200-95177800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:95171800-95173800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:95171800-95174000	Weak transcription	Lung	lung
5	chr5:95171800-95174200	Weak transcription	Fetal Intestine Large	intestine
6	chr5:95171800-95175400	Weak transcription	Esophagus	oesophagus
7	chr5:95171800-95175600	Weak transcription	Gastric	stomach
8	chr5:95171800-95176200	Weak transcription	Placenta	Placenta
9	chr5:95171800-95177200	Weak transcription	Colonic Mucosa	Colon
10	chr5:95171800-95177600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:95171800-95178200	Weak transcription	Right Ventricle	heart
12	chr5:95171800-95178800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr5:95171800-95178800	Weak transcription	Left Ventricle	heart
14	chr5:95171800-95185800	Weak transcription	Pancreas	Pancrea
15	chr5:95172200-95173600	Weak transcription	Psoas Muscle	Psoas
16	chr5:95172200-95174000	Weak transcription	Fetal Intestine Small	intestine
17	chr5:95172200-95174800	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr5:95172200-95180400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr5:95172400-95173600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr5:95172400-95173800	Enhancers	Brain Cingulate Gyrus	brain
21	chr5:95172400-95175200	Weak transcription	Stomach Mucosa	stomach
22	chr5:95172400-95175400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr5:95172400-95177400	Weak transcription	A549	lung
24	chr5:95172600-95173600	Weak transcription	Brain Angular Gyrus	brain
25	chr5:95172600-95173800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr5:95172600-95174000	Enhancers	GM12878-XiMat	blood
27	chr5:95172600-95174400	Weak transcription	Primary B cells from cord blood	blood
28	chr5:95172600-95174600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr5:95172600-95174800	Weak transcription	Fetal Thymus	thymus
30	chr5:95172600-95175400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr5:95172600-95175600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr5:95172600-95176400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr5:95172600-95176400	Weak transcription	Primary B cells from peripheral blood	blood
34	chr5:95172600-95176600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr5:95172600-95176800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr5:95172600-95177000	Weak transcription	Adipose Nuclei	Adipose
37	chr5:95172600-95177200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr5:95172600-95177400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr5:95172600-95177600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr5:95172600-95177600	Weak transcription	Liver	Liver
41	chr5:95172600-95177600	Weak transcription	NHDF-Ad	bronchial
42	chr5:95172600-95177800	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr5:95172600-95177800	Weak transcription	HSMMtube	muscle
44	chr5:95172600-95177800	Weak transcription	Osteobl	bone
45	chr5:95172600-95178600	Weak transcription	Duodenum Mucosa	Duodenum
46	chr5:95172600-95178600	Weak transcription	Spleen	Spleen
47	chr5:95172800-95173800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr5:95172800-95175600	Weak transcription	Hela-S3	cervix
49	chr5:95172800-95176800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr5:95172800-95177000	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links