Variant report

Variant	rs149973270
Chromosome Location	chr20:25022749-25022750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:25022614..25025327-chr20:25028235..25031123,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-VSX1-4	chr20:25021899-25023358	NONHSAT079123

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062140	chr20:24807962-25304054	Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv544219	chr20:24807962-25304054	Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv1056345	chr20:24819570-25168159	Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv1055341	chr20:24848416-25302271	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv912826	chr20:24987787-25071454	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3407490	chr20:25022672-25023051	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25012000-25026400	Enhancers	Right Ventricle	heart
2	chr20:25012800-25026400	Enhancers	Brain Angular Gyrus	brain
3	chr20:25014000-25026400	Enhancers	Brain Cingulate Gyrus	brain
4	chr20:25014200-25023000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr20:25014200-25026400	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr20:25014400-25025600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr20:25016200-25023800	Enhancers	Stomach Mucosa	stomach
8	chr20:25016200-25024200	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr20:25016200-25024600	Enhancers	Fetal Thymus	thymus
10	chr20:25016400-25024000	Enhancers	Small Intestine	intestine
11	chr20:25016400-25024400	Genic enhancers	Fetal Intestine Small	intestine
12	chr20:25016400-25025800	Enhancers	Fetal Heart	heart
13	chr20:25016600-25023800	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr20:25016600-25024600	Enhancers	Pancreas	Pancrea
15	chr20:25016600-25025400	Enhancers	Fetal Muscle Leg	muscle
16	chr20:25016600-25027600	Enhancers	Right Atrium	heart
17	chr20:25016600-25034800	Weak transcription	A549	lung
18	chr20:25017000-25026600	Enhancers	Brain Anterior Caudate	brain
19	chr20:25017400-25026400	Enhancers	Brain Substantia Nigra	brain
20	chr20:25017600-25026400	Enhancers	Left Ventricle	heart
21	chr20:25017800-25023400	Genic enhancers	Primary T cells fromperipheralblood	blood
22	chr20:25017800-25024400	Enhancers	Lung	lung
23	chr20:25017800-25029000	Genic enhancers	Placenta	Placenta
24	chr20:25017800-25034200	Weak transcription	Fetal Kidney	kidney
25	chr20:25018200-25023000	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr20:25018200-25024800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr20:25018400-25024800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr20:25018600-25024600	Enhancers	Fetal Muscle Trunk	muscle
29	chr20:25018600-25025600	Enhancers	Liver	Liver
30	chr20:25018800-25023200	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr20:25019600-25023400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr20:25020200-25024400	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr20:25020200-25026400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr20:25020400-25022800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr20:25020400-25024400	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr20:25020600-25022800	Enhancers	Primary T cells from cord blood	blood
37	chr20:25020600-25025000	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr20:25020600-25027000	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr20:25020600-25037400	Enhancers	Psoas Muscle	Psoas
40	chr20:25021200-25022800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr20:25021200-25023000	Enhancers	Primary B cells from cord blood	blood
42	chr20:25021200-25023400	Genic enhancers	Primary B cells from peripheral blood	blood
43	chr20:25021200-25024600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
44	chr20:25021200-25025000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr20:25021200-25025400	Weak transcription	Fetal Brain Female	brain
46	chr20:25021200-25027200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr20:25021200-25032600	Weak transcription	NHDF-Ad	bronchial
48	chr20:25021400-25023000	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr20:25021400-25023000	Weak transcription	Fetal Lung	lung
50	chr20:25021400-25023400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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