The 2.0 version of rSNPBase

Variant report

Variant rs149976006
Chromosome Location chr18:43476008-43476009
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:43420200-43491800 Weak transcription iPS-15b Cell Line embryonic stem cell
2 chr18:43440600-43489600 Weak transcription Small Intestine intestine
3 chr18:43442400-43500200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
4 chr18:43445600-43478000 Weak transcription H9 Cell Line embryonic stem cell
5 chr18:43445800-43483800 Weak transcription K562 blood
6 chr18:43446200-43479400 Weak transcription Fetal Brain Male brain
7 chr18:43447000-43478400 Weak transcription Stomach Mucosa stomach
8 chr18:43447000-43491800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
9 chr18:43450800-43478000 Weak transcription Right Ventricle heart
10 chr18:43451800-43519600 Weak transcription Pancreatic Islets Pancreatic Islet
11 chr18:43452000-43479000 Weak transcription HMEC breast
12 chr18:43455400-43511400 Strong transcription Primary T regulatory cells fromperipheralblood blood
13 chr18:43455600-43476400 Strong transcription Primary T cells from cord blood blood
14 chr18:43456400-43490200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
15 chr18:43456400-43498000 Strong transcription Breast Myoepithelial Primary Cells Breast
16 chr18:43456400-43500400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
17 chr18:43457200-43479200 Weak transcription H1 Cell Line embryonic stem cell
18 chr18:43459200-43478400 Weak transcription Primary T killer memory cells from peripheral blood blood
19 chr18:43459200-43479200 Weak transcription Psoas Muscle Psoas
20 chr18:43460800-43500200 Strong transcription Osteobl bone
21 chr18:43460800-43500400 Strong transcription Primary T helper cells fromperipheralblood blood
22 chr18:43461000-43478000 Weak transcription Pancreas Pancrea
23 chr18:43462200-43478000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr18:43462200-43492000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr18:43462400-43477800 Weak transcription iPS-20b Cell Line embryonic stem cell
26 chr18:43464800-43477800 Weak transcription Brain Hippocampus Middle brain
27 chr18:43464800-43478000 Weak transcription Brain Anterior Caudate brain
28 chr18:43464800-43478000 Weak transcription Esophagus oesophagus
29 chr18:43464800-43478000 Weak transcription Gastric stomach
30 chr18:43464800-43478200 Weak transcription Ovary ovary
31 chr18:43464800-43478200 Weak transcription GM12878-XiMat blood
32 chr18:43464800-43479800 Weak transcription Hela-S3 cervix
33 chr18:43465400-43476800 Weak transcription Rectal Smooth Muscle rectum
34 chr18:43466400-43498400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
35 chr18:43467800-43477800 Weak transcription Placenta Amnion Placenta Amnion
36 chr18:43467800-43478000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
37 chr18:43467800-43478000 Weak transcription iPS-18 Cell Line embryonic stem cell
38 chr18:43468000-43478000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
39 chr18:43469200-43478000 Weak transcription Spleen Spleen
40 chr18:43469400-43476200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
41 chr18:43469400-43478000 Weak transcription Aorta Aorta
42 chr18:43469400-43478000 Weak transcription Lung lung
43 chr18:43469400-43487600 Weak transcription ES-I3 Cell Line embryonic stem cell
44 chr18:43469600-43478000 Weak transcription Primary T killer naive cells fromperipheralblood blood
45 chr18:43469800-43476800 Weak transcription Colon Smooth Muscle Colon
46 chr18:43469800-43478000 Weak transcription Colonic Mucosa Colon
47 chr18:43469800-43519000 Weak transcription A549 lung
48 chr18:43470000-43478000 Weak transcription HUES48 Cell Line embryonic stem cell
49 chr18:43470000-43478000 Weak transcription Brain Substantia Nigra brain
50 chr18:43470000-43478200 Weak transcription Cortex derived primary cultured neurospheres brain

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Last update: Aug 31, 2015