Variant report

Variant	rs1501551
Chromosome Location	chr1:211176922-211176923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10863874	0.91[YRI][hapmap];0.85[AFR][1000 genomes]
rs11582507	0.91[YRI][hapmap];0.85[AFR][1000 genomes]
rs12722738	0.82[AFR][1000 genomes]
rs1393026	0.88[LWK][hapmap];0.92[YRI][hapmap]
rs1393027	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1501558	0.83[YRI][hapmap]
rs1501569	0.83[YRI][hapmap]
rs2221250	0.91[YRI][hapmap];0.83[AFR][1000 genomes]
rs2358214	0.83[AFR][1000 genomes]
rs33985151	0.88[LWK][hapmap];0.92[YRI][hapmap]
rs4306193	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61850226	0.86[AFR][1000 genomes]
rs6678283	0.88[LWK][hapmap];0.92[YRI][hapmap]
rs6697578	0.89[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1501551	LQK1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211152800-211183400	Weak transcription	HSMMtube	muscle
2	chr1:211163800-211179400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:211168000-211180600	Weak transcription	HSMM	muscle
4	chr1:211168000-211181600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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