Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RD3-8	chr1:211096570-211097137	ucscGeneNc_uc001hjr_2

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10863869	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11119654	0.83[CHD][hapmap]
rs11806852	0.83[CHD][hapmap];0.82[JPT][hapmap]
rs12026374	0.83[JPT][hapmap]
rs12028941	0.85[CHD][hapmap]
rs12036999	0.85[CHD][hapmap];0.82[JPT][hapmap]
rs1501545	0.82[JPT][hapmap]
rs1501548	0.85[CHD][hapmap];0.82[JPT][hapmap]
rs1501549	0.83[CHD][hapmap];0.82[JPT][hapmap]
rs1501550	0.83[CHD][hapmap]
rs1532682	0.82[JPT][hapmap]
rs4570464	0.82[JPT][hapmap]
rs4575146	0.81[JPT][hapmap]
rs4951487	0.82[CEU][hapmap];0.95[MEX][hapmap];0.83[YRI][hapmap]
rs6540634	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6540636	0.84[CHD][hapmap];0.82[JPT][hapmap]
rs6540648	0.83[CHD][hapmap];0.82[JPT][hapmap]
rs6666342	0.82[JPT][hapmap]
rs6680997	0.83[CHD][hapmap];0.82[JPT][hapmap]
rs7514606	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs7551412	0.82[JPT][hapmap]
rs7553997	0.82[JPT][hapmap]
rs9782907	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9783090	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv873154	chr1:211057697-211117197	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1501555	CDK18	cis	cerebellum	SCAN
rs1501555	LQK1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211089200-211098800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211093400-211110800	Weak transcription	HSMM	muscle
3	chr1:211096000-211097600	Enhancers	HSMMtube	muscle
4	chr1:211096400-211097400	Enhancers	Brain Anterior Caudate	brain

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