Variant report

Variant	rs1501566
Chromosome Location	chr1:211086601-211086602
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211081640..211084385-chr1:211086454..211088372,2	K562	blood:
2	chr1:211085731..211087524-chr1:211090646..211093689,3	K562	blood:
3	chr1:211081640..211084626-chr1:211086454..211089760,4	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10494931	0.81[CEU][hapmap]
rs10863870	0.89[EUR][1000 genomes]
rs10863874	0.96[CEU][hapmap];0.85[JPT][hapmap];0.82[YRI][hapmap];0.85[EUR][1000 genomes]
rs11119637	0.80[EUR][1000 genomes]
rs11119658	0.81[CEU][hapmap]
rs11485203	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11582507	0.81[CEU][hapmap];0.82[YRI][hapmap]
rs12760791	0.81[CEU][hapmap]
rs1393026	1.00[CEU][hapmap];0.87[YRI][hapmap];0.86[EUR][1000 genomes]
rs1501558	0.81[CEU][hapmap]
rs1501567	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1501568	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1501569	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1539531	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17188748	0.83[CEU][hapmap]
rs1875435	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2221250	0.83[YRI][hapmap]
rs33985151	0.81[CEU][hapmap];0.87[YRI][hapmap]
rs35711968	0.84[EUR][1000 genomes]
rs61848994	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6669457	0.96[CEU][hapmap];0.85[JPT][hapmap]
rs6678283	1.00[CEU][hapmap];0.87[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6698448	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7517771	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7535286	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7536519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv873154	chr1:211057697-211117197	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv549124	chr1:211069694-211088474	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211082800-211091000	Weak transcription	Brain Anterior Caudate	brain
2	chr1:211083000-211089600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:211083000-211091000	Weak transcription	Brain Angular Gyrus	brain
4	chr1:211083000-211091000	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:211083000-211091200	Weak transcription	Brain Substantia Nigra	brain
6	chr1:211083200-211088000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:211083800-211089400	Weak transcription	HSMMtube	muscle
8	chr1:211084600-211089400	Weak transcription	HSMM	muscle
9	chr1:211085400-211089400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr1:211085600-211089000	Weak transcription	Liver	Liver
11	chr1:211085800-211091000	Weak transcription	Brain Inferior Temporal Lobe	brain

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