Variant report

Variant	rs1501569
Chromosome Location	chr1:211093590-211093591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211085731..211087524-chr1:211090646..211093689,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10863870	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10863874	0.89[CEU][hapmap];0.85[JPT][hapmap];0.88[YRI][hapmap]
rs11119637	0.89[EUR][1000 genomes]
rs11485203	0.83[EUR][1000 genomes]
rs11582507	0.88[YRI][hapmap]
rs12121565	0.81[CEU][hapmap]
rs1393026	0.92[CEU][hapmap];0.92[YRI][hapmap];0.81[EUR][1000 genomes]
rs1501551	0.83[YRI][hapmap]
rs1501558	0.83[YRI][hapmap]
rs1501566	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1501567	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1501568	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1539531	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1777250	0.82[CEU][hapmap]
rs1875435	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1875438	0.82[CEU][hapmap]
rs2221250	0.88[YRI][hapmap]
rs33985151	0.92[YRI][hapmap]
rs61848994	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6669457	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs6678283	0.92[CEU][hapmap];0.80[JPT][hapmap];0.92[YRI][hapmap];0.81[EUR][1000 genomes]
rs6697578	0.85[YRI][hapmap]
rs6698448	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7517771	0.81[EUR][1000 genomes]
rs7535286	0.81[EUR][1000 genomes]
rs7536519	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv873154	chr1:211057697-211117197	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211089200-211098800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211090000-211094000	Weak transcription	Liver	Liver
3	chr1:211091600-211096000	Weak transcription	HSMMtube	muscle
4	chr1:211091800-211096200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:211092000-211096400	Weak transcription	Brain Anterior Caudate	brain
6	chr1:211092000-211096400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr1:211093000-211093600	Enhancers	K562	blood
8	chr1:211093400-211110800	Weak transcription	HSMM	muscle

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