Variant report

Variant	rs150408738
Chromosome Location	chr7:99337265-99337266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99327792..99330076-chr7:99335753..99337453,2	K562	blood:
2	chr7:99331906..99334521-chr7:99334977..99338227,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000160870	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv888771	chr7:99294762-99355278	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv3331003	chr7:99337054-99386069	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99306000-99339000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr7:99306800-99340800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr7:99311800-99349000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:99321800-99338200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:99324400-99339200	Weak transcription	Brain Substantia Nigra	brain
6	chr7:99327200-99339200	Weak transcription	Brain Anterior Caudate	brain
7	chr7:99331200-99337600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:99331400-99338800	Weak transcription	Liver	Liver
9	chr7:99333600-99339600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:99334400-99337600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr7:99334400-99337800	Strong transcription	Left Ventricle	heart
12	chr7:99334600-99338800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:99334800-99340800	Weak transcription	Pancreas	Pancrea
14	chr7:99335000-99337800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr7:99335600-99337600	Weak transcription	HSMMtube	muscle
16	chr7:99335800-99337600	Weak transcription	HSMM	muscle
17	chr7:99335800-99338400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:99335800-99338400	Weak transcription	Adipose Nuclei	Adipose
19	chr7:99335800-99340000	Weak transcription	Brain Hippocampus Middle	brain
20	chr7:99335800-99340600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr7:99336000-99337400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:99336400-99337800	Strong transcription	Aorta	Aorta
23	chr7:99336600-99337600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr7:99336600-99338400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr7:99336800-99337600	Weak transcription	Lung	lung
26	chr7:99336800-99339000	Weak transcription	Psoas Muscle	Psoas
27	chr7:99337000-99337400	Weak transcription	HMEC	breast
28	chr7:99337000-99337600	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr7:99337000-99341800	Enhancers	HepG2	liver
30	chr7:99337200-99337800	Strong transcription	Brain Angular Gyrus	brain
31	chr7:99337200-99338400	Enhancers	NHEK	skin
32	chr7:99337200-99339200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr7:99337200-99339800	Enhancers	Skeletal Muscle Female	skeletal muscle

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