Variant report

Variant	rs1506072
Chromosome Location	chr1:225202821-225202822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225202258..225204234-chr8:111898982..111900583,2	MCF-7	breast:

Extended variants
information (count: 289 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:282)

rs_ID	r²[population]
rs10158926	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10399841	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10495228	0.83[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs10495229	0.92[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs10495230	0.89[ASN][1000 genomes]
rs1078794	0.88[LWK][hapmap];0.90[MKK][hapmap]
rs1080260	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10915779	1.00[CEU][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1110378	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1110379	0.92[EUR][1000 genomes]
rs12561993	0.92[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs12562085	0.92[CHB][hapmap];0.96[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs12562917	0.88[ASN][1000 genomes]
rs12563033	0.91[ASN][1000 genomes]
rs12563286	0.83[ASN][1000 genomes]
rs12563857	0.92[CHB][hapmap];0.96[CHD][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs12563866	0.88[ASN][1000 genomes]
rs12564683	0.82[ASN][1000 genomes]
rs12564768	0.88[ASN][1000 genomes]
rs12564776	0.88[ASN][1000 genomes]
rs12565019	0.83[ASN][1000 genomes]
rs12565073	0.88[ASN][1000 genomes]
rs12565401	0.85[ASN][1000 genomes]
rs12565439	0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs12565823	0.85[ASN][1000 genomes]
rs12565833	0.88[ASN][1000 genomes]
rs12566396	0.86[ASN][1000 genomes]
rs12566857	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs12566886	0.86[ASN][1000 genomes]
rs12567069	0.88[ASN][1000 genomes]
rs12567082	0.81[ASN][1000 genomes]
rs12567091	0.91[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs12567334	0.81[ASN][1000 genomes]
rs12567461	0.83[ASN][1000 genomes]
rs12567470	0.83[ASN][1000 genomes]
rs12567499	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs12567812	0.88[ASN][1000 genomes]
rs12568142	0.91[ASN][1000 genomes]
rs1480104	0.85[ASN][1000 genomes]
rs1482279	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1482280	0.92[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs1506069	0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1506070	0.92[CHB][hapmap];0.96[CHD][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs1506071	1.00[CEU][hapmap];0.81[GIH][hapmap];0.93[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1506074	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1542571	0.83[ASN][1000 genomes]
rs1587980	0.91[ASN][1000 genomes]
rs1600532	0.85[ASN][1000 genomes]
rs1600865	0.82[ASN][1000 genomes]
rs16843950	0.92[CHB][hapmap];0.96[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs16843956	0.92[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs16843988	0.92[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs16843997	0.85[ASN][1000 genomes]
rs16844005	0.85[ASN][1000 genomes]
rs16844334	0.85[ASN][1000 genomes]
rs16844355	0.92[CHB][hapmap];0.96[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs16844377	0.92[CHB][hapmap];0.96[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs16844400	0.83[ASN][1000 genomes]
rs16857787	0.83[ASN][1000 genomes]
rs16858145	0.83[ASN][1000 genomes]
rs16858216	0.83[ASN][1000 genomes]
rs16858299	0.82[ASN][1000 genomes]
rs16858661	0.92[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs16858758	0.92[CHB][hapmap];0.96[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs16858766	0.86[ASN][1000 genomes]
rs16858829	0.92[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs16858831	0.92[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs16858932	0.92[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs16858962	0.92[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs1832540	0.85[EUR][1000 genomes]
rs1905113	0.91[ASN][1000 genomes]
rs1905114	0.92[CHB][hapmap];0.86[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1905115	0.90[ASN][1000 genomes]
rs1905117	0.90[ASN][1000 genomes]
rs1934203	0.81[ASN][1000 genomes]
rs1936629	0.82[ASN][1000 genomes]
rs1936631	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1936635	0.85[ASN][1000 genomes]
rs1961688	0.91[CHB][hapmap];0.92[JPT][hapmap]
rs1982707	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2014656	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2014667	0.87[EUR][1000 genomes]
rs2086368	0.92[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs2101143	0.83[ASN][1000 genomes]
rs2128267	0.85[ASN][1000 genomes]
rs2128268	1.00[CEU][hapmap];0.93[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2128270	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2199832	0.82[ASN][1000 genomes]
rs2291227	0.90[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs2406097	1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.87[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2406098	0.83[ASN][1000 genomes]
rs2449256	1.00[CEU][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2449257	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2449258	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2449259	0.92[CHB][hapmap];0.96[CHD][hapmap];0.86[JPT][hapmap];0.98[LWK][hapmap];0.93[MKK][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2449260	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2449267	0.88[LWK][hapmap];0.87[MKK][hapmap]
rs2449269	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2449272	0.88[LWK][hapmap];0.90[MKK][hapmap]
rs2449273	0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2449274	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2449275	0.88[LWK][hapmap];0.90[MKK][hapmap]
rs2449276	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2449280	0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2449281	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2449282	0.85[AFR][1000 genomes]
rs2449287	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2449292	0.92[CHB][hapmap];0.96[CHD][hapmap];0.86[JPT][hapmap];0.98[LWK][hapmap];0.93[MKK][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2449304	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2449311	0.92[CHB][hapmap];0.96[CHD][hapmap];0.86[JPT][hapmap];0.98[LWK][hapmap];0.93[MKK][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2449313	0.81[ASW][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap];0.93[LWK][hapmap];0.94[MKK][hapmap];0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2449315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2449316	0.83[ASN][1000 genomes]
rs2449317	0.87[LWK][hapmap];0.89[MKK][hapmap]
rs2449320	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2449322	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2449324	0.88[LWK][hapmap];0.90[MKK][hapmap]
rs2456335	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2456336	1.00[CEU][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2456339	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2456340	0.89[CHB][hapmap];0.86[JPT][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2456341	0.87[AMR][1000 genomes]
rs2456349	1.00[CEU][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2489296	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2489298	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2489300	0.86[ASN][1000 genomes]
rs2489301	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2489302	0.82[ASN][1000 genomes]
rs2489303	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2489310	0.82[ASN][1000 genomes]
rs2489311	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2489313	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2489314	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2489322	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2489324	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2489325	0.84[AFR][1000 genomes]
rs2489327	1.00[CEU][hapmap];0.81[GIH][hapmap];0.93[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2489328	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2489330	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2489332	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2489337	0.83[CEU][hapmap];0.93[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2489341	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2489343	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2489344	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2489345	0.88[LWK][hapmap];0.90[MKK][hapmap]
rs2489346	0.91[CEU][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2489348	1.00[CEU][hapmap];0.81[GIH][hapmap];0.93[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2489350	0.88[LWK][hapmap];0.90[MKK][hapmap]
rs2489352	1.00[CEU][hapmap];0.81[GIH][hapmap];0.93[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2489353	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2489355	0.85[EUR][1000 genomes]
rs2489358	0.88[LWK][hapmap];0.90[MKK][hapmap]
rs2501061	0.92[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap];0.98[LWK][hapmap];0.93[MKK][hapmap];0.90[YRI][hapmap];0.86[ASN][1000 genomes]
rs2501064	0.92[CHB][hapmap];0.96[CHD][hapmap];0.86[JPT][hapmap];0.98[LWK][hapmap];0.93[MKK][hapmap];0.90[YRI][hapmap];0.86[ASN][1000 genomes]
rs2501066	0.92[CHB][hapmap];0.96[CHD][hapmap];0.86[JPT][hapmap];0.96[LWK][hapmap];0.93[MKK][hapmap];0.90[YRI][hapmap];0.86[ASN][1000 genomes]
rs2501068	0.81[ASN][1000 genomes]
rs2501072	0.92[CHB][hapmap];0.96[CHD][hapmap];0.86[JPT][hapmap];0.98[LWK][hapmap];0.93[MKK][hapmap];0.90[YRI][hapmap];0.83[ASN][1000 genomes]
rs2501073	0.81[ASN][1000 genomes]
rs2501078	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2501081	0.83[ASN][1000 genomes]
rs2501082	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2501083	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2501085	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2501087	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2501100	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2501101	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2501108	0.85[JPT][hapmap]
rs2501110	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2501113	0.85[LWK][hapmap];0.90[MKK][hapmap]
rs2501114	0.83[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap]
rs2501120	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2501121	0.88[LWK][hapmap];0.90[MKK][hapmap]
rs2501123	0.86[AFR][1000 genomes]
rs2501125	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2501127	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2501129	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2501130	0.92[CHB][hapmap];0.96[CHD][hapmap];0.86[JPT][hapmap];0.98[LWK][hapmap];0.93[MKK][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2501133	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2501134	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2501135	0.91[CHB][hapmap];0.85[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2501140	0.86[ASN][1000 genomes]
rs2501141	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.86[ASN][1000 genomes]
rs2501143	0.85[ASN][1000 genomes]
rs2501147	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2501151	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2501152	0.88[MKK][hapmap]
rs2501153	0.86[ASN][1000 genomes]
rs2501156	0.92[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.86[ASN][1000 genomes]
rs2516334	0.82[LWK][hapmap];0.87[MKK][hapmap]
rs2929626	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2939363	1.00[CEU][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3101904	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3101907	0.85[ASN][1000 genomes]
rs3101908	0.92[CHB][hapmap];0.96[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs3101910	0.85[AMR][1000 genomes]
rs3101915	0.85[ASN][1000 genomes]
rs3101916	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3101917	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3101919	0.85[ASN][1000 genomes]
rs3102106	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3102114	0.85[ASN][1000 genomes]
rs3102115	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3105549	0.85[ASN][1000 genomes]
rs3105555	0.85[ASN][1000 genomes]
rs3105564	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3105565	0.85[JPT][hapmap]
rs3105570	0.85[ASN][1000 genomes]
rs3105571	0.85[ASN][1000 genomes]
rs3105572	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3105575	0.81[ASN][1000 genomes]
rs3120985	0.85[ASN][1000 genomes]
rs3120989	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3120991	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3120992	0.85[ASN][1000 genomes]
rs3120993	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3128654	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3128655	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3128657	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3128659	0.90[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs3128663	0.85[ASN][1000 genomes]
rs3128664	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3128665	0.85[ASN][1000 genomes]
rs3128666	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3128667	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3128669	0.85[ASN][1000 genomes]
rs3128670	0.85[ASN][1000 genomes]
rs3991317	0.83[ASN][1000 genomes]
rs4342820	0.83[ASN][1000 genomes]
rs4379650	0.83[ASN][1000 genomes]
rs55668169	0.86[ASN][1000 genomes]
rs55681905	0.85[ASN][1000 genomes]
rs55754430	0.83[ASN][1000 genomes]
rs55761817	0.90[ASN][1000 genomes]
rs55764147	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55785201	0.89[ASN][1000 genomes]
rs55786647	0.90[ASN][1000 genomes]
rs55876129	0.91[ASN][1000 genomes]
rs55962425	0.91[ASN][1000 genomes]
rs56061128	0.85[ASN][1000 genomes]
rs56088704	0.86[ASN][1000 genomes]
rs56152573	0.86[ASN][1000 genomes]
rs56203783	0.81[ASN][1000 genomes]
rs56251723	0.89[ASN][1000 genomes]
rs56337810	0.89[ASN][1000 genomes]
rs56339924	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57137890	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs57889280	0.89[ASN][1000 genomes]
rs58279596	0.81[ASN][1000 genomes]
rs59420435	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs60392992	0.85[ASN][1000 genomes]
rs60692803	0.83[ASN][1000 genomes]
rs61211002	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61438284	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61466304	0.83[ASN][1000 genomes]
rs61849768	0.81[AMR][1000 genomes]
rs6426049	0.83[ASN][1000 genomes]
rs6426051	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6426052	0.83[ASN][1000 genomes]
rs6426163	0.92[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6662231	0.83[ASN][1000 genomes]
rs6677680	0.83[ASN][1000 genomes]
rs6683938	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6686694	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6689915	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6697156	0.92[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs6697382	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6702733	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6702926	0.82[ASN][1000 genomes]
rs72629701	0.85[ASN][1000 genomes]
rs72629702	0.85[ASN][1000 genomes]
rs729398	0.83[ASN][1000 genomes]
rs7517625	0.85[ASN][1000 genomes]
rs7521702	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7523949	0.92[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs7530659	0.83[AMR][1000 genomes]
rs7531542	1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs7547639	0.85[ASN][1000 genomes]
rs7548138	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs769295	0.85[ASN][1000 genomes]
rs973980	0.83[ASN][1000 genomes]
rs981068	0.89[ASN][1000 genomes]
rs995613	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757773	chr1:225087924-225253274	Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv2759001	chr1:225087924-225253274	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3438976	chr1:225133567-225248753	Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1804634	chr1:225137134-225206826	Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv873225	chr1:225162060-225373936	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv549262	chr1:225191852-225319898	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv549263	chr1:225202426-225319898	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1506072	TMEM63A	cis	cerebellum	SCAN
rs1506072	CAPN2	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225187000-225203600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:225192600-225203400	Weak transcription	Ovary	ovary
3	chr1:225199400-225207000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:225199600-225203400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:225201200-225206200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:225201400-225203600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr1:225201800-225203200	Weak transcription	Gastric	stomach
8	chr1:225201800-225203400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:225202000-225203600	Weak transcription	Pancreas	Pancrea
10	chr1:225202000-225205200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:225202200-225203400	Weak transcription	Fetal Intestine Small	intestine
12	chr1:225202200-225203800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
13	chr1:225202200-225204800	Weak transcription	Fetal Stomach	stomach
14	chr1:225202800-225204000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:225202800-225204800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Variant report

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