Variant report

Variant	rs1507924
Chromosome Location	chr4:48069287-48069288
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1018199	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1046695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11722304	1.00[ASN][1000 genomes]
rs11724102	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11724347	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11737047	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13108221	1.00[ASN][1000 genomes]
rs2352587	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2352588	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28505096	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34184567	1.00[ASN][1000 genomes]
rs36082349	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55781011	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6814131	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6832282	1.00[CEU][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6837702	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6844476	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151629	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs906486	1.00[CEU][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9992557	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48061200-48075200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr4:48065400-48069600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr4:48066800-48076400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr4:48067000-48082000	Strong transcription	Primary T cells from cord blood	blood
5	chr4:48067400-48078600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr4:48067600-48069800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:48067600-48073200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr4:48067600-48080400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr4:48067600-48081200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr4:48067600-48102400	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr4:48067800-48075200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr4:48067800-48081600	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr4:48068000-48075400	Weak transcription	Thymus	Thymus
14	chr4:48068200-48070800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr4:48068200-48075800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
16	chr4:48068600-48069400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr4:48068600-48080000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr4:48068800-48069600	Weak transcription	GM12878-XiMat	blood
19	chr4:48068800-48074400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr4:48069000-48069400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:48069200-48069800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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