Variant report

Variant	rs1508444
Chromosome Location	chr6:129079265-129079266
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1508446	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1876579	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1911787	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs774278	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs774279	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7745581	0.83[AMR][1000 genomes]
rs7763496	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs809570	0.83[AMR][1000 genomes]
rs9388664	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030330	chr6:129008538-129095108	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv933689	chr6:129075729-129208730	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:129064400-129089200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:129078000-129081200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:129078000-129081200	Enhancers	NHEK	skin
4	chr6:129078200-129079400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:129078600-129079400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:129079000-129084600	Weak transcription	HMEC	breast
7	chr6:129079200-129079600	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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