Variant report

Variant	rs1508795
Chromosome Location	chr5:98102790-98102791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:98102131..98106489-chr5:98107320..98111501,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174136	Chromatin interaction
ENSG00000246763	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11954623	1.00[AMR][1000 genomes]
rs11957518	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1508794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166354	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166367	1.00[AMR][1000 genomes]
rs17166368	1.00[AMR][1000 genomes]
rs2035229	1.00[AMR][1000 genomes]
rs2036691	1.00[AMR][1000 genomes]
rs3952932	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55660533	1.00[AMR][1000 genomes]
rs57293752	1.00[AMR][1000 genomes]
rs58710516	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6890688	1.00[AMR][1000 genomes]
rs6895731	1.00[AMR][1000 genomes]
rs73151405	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151407	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151426	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151428	1.00[AMR][1000 genomes]
rs73151441	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151454	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151459	1.00[AMR][1000 genomes]
rs73151463	1.00[AMR][1000 genomes]
rs73151464	1.00[AMR][1000 genomes]
rs73151473	1.00[AMR][1000 genomes]
rs73153510	1.00[AMR][1000 genomes]
rs7707936	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906681	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882414	chr5:98063710-98193164	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98089600-98104000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:98097400-98103200	Weak transcription	HSMMtube	muscle
3	chr5:98099400-98102800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:98099400-98102800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:98099400-98103200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr5:98099400-98103400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:98099400-98103400	Weak transcription	Fetal Muscle Leg	muscle
8	chr5:98099400-98104000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:98099600-98103000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:98099600-98103400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:98099600-98103400	Weak transcription	NH-A	brain
12	chr5:98099800-98103000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:98099800-98103200	Weak transcription	HSMM	muscle
14	chr5:98100000-98103200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr5:98100000-98103200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr5:98100000-98103200	Weak transcription	Osteobl	bone
17	chr5:98100400-98102800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr5:98100600-98102800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr5:98100600-98103000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr5:98100600-98103000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr5:98100600-98103200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr5:98100600-98103200	Weak transcription	NHLF	lung
23	chr5:98100600-98104000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr5:98100600-98104200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr5:98102200-98103200	Enhancers	NHDF-Ad	bronchial
26	chr5:98102600-98102800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr5:98102600-98103800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links