Variant report

Variant	rs1509465
Chromosome Location	chr2:210476185-210476186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10172200	0.87[JPT][hapmap]
rs10196314	0.87[JPT][hapmap]
rs10196600	0.87[JPT][hapmap]
rs10198751	0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10206817	0.93[JPT][hapmap]
rs10490021	0.87[JPT][hapmap]
rs10932305	0.87[JPT][hapmap]
rs11692075	0.87[JPT][hapmap]
rs12614031	0.87[JPT][hapmap]
rs12615372	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12616589	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs12618080	0.87[JPT][hapmap]
rs12620654	1.00[JPT][hapmap]
rs12622979	0.95[ASN][1000 genomes]
rs12992342	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13385585	0.87[JPT][hapmap]
rs13419929	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1396779	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1509468	0.88[JPT][hapmap]
rs1509469	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs1509470	0.83[ASN][1000 genomes]
rs16843022	0.82[CEU][hapmap]
rs16843329	0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs16843351	0.93[JPT][hapmap]
rs16843354	0.87[JPT][hapmap]
rs16843360	0.86[JPT][hapmap]
rs16843382	0.87[JPT][hapmap]
rs16843453	0.87[JPT][hapmap]
rs16843614	0.87[JPT][hapmap]
rs16843618	0.87[JPT][hapmap]
rs169636	1.00[CEU][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes]
rs2048250	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2191910	0.87[JPT][hapmap]
rs2239552	0.87[JPT][hapmap]
rs2239553	0.87[JPT][hapmap]
rs2239672	0.87[JPT][hapmap]
rs2268042	0.87[JPT][hapmap]
rs2268044	0.87[JPT][hapmap]
rs2271252	0.87[JPT][hapmap]
rs2286849	0.86[JPT][hapmap]
rs2286850	0.87[JPT][hapmap]
rs2300154	0.87[JPT][hapmap]
rs2366112	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2663648	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2663649	0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs2663650	0.85[ASN][1000 genomes]
rs2663651	0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs2663653	0.90[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs2663659	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2710474	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2710475	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2710477	0.83[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs2710479	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs2710482	0.87[JPT][hapmap]
rs2710486	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs288070	1.00[CEU][hapmap]
rs288071	1.00[CEU][hapmap]
rs288079	1.00[CEU][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes]
rs288081	1.00[CEU][hapmap];0.93[JPT][hapmap]
rs288084	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs288087	1.00[CEU][hapmap];0.93[JPT][hapmap];0.80[EUR][1000 genomes]
rs288088	0.80[EUR][1000 genomes]
rs288094	1.00[CEU][hapmap]
rs288096	1.00[CEU][hapmap]
rs34455059	0.94[ASN][1000 genomes]
rs34850994	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs35409969	0.94[ASN][1000 genomes]
rs3738935	0.81[JPT][hapmap]
rs3754597	0.87[JPT][hapmap]
rs3768810	0.87[JPT][hapmap]
rs3768813	0.87[JPT][hapmap]
rs3768814	0.87[JPT][hapmap]
rs3768815	0.87[JPT][hapmap]
rs3768816	0.87[JPT][hapmap]
rs3768822	0.87[JPT][hapmap]
rs3768826	0.87[JPT][hapmap]
rs3768832	0.87[JPT][hapmap]
rs3768833	0.87[JPT][hapmap]
rs3768834	0.87[JPT][hapmap]
rs3768835	0.87[JPT][hapmap]
rs3820746	0.91[JPT][hapmap]
rs3820748	0.87[JPT][hapmap]
rs4673486	0.87[JPT][hapmap]
rs55911510	0.97[ASN][1000 genomes]
rs56023260	0.83[ASN][1000 genomes]
rs56775639	0.94[ASN][1000 genomes]
rs56853570	0.96[ASN][1000 genomes]
rs57781584	0.87[ASN][1000 genomes]
rs58636345	0.94[ASN][1000 genomes]
rs59032380	0.94[ASN][1000 genomes]
rs60138527	0.83[ASN][1000 genomes]
rs60359169	0.95[ASN][1000 genomes]
rs60497472	0.87[ASN][1000 genomes]
rs6709925	0.87[JPT][hapmap]
rs6717554	0.87[JPT][hapmap]
rs6720659	0.87[JPT][hapmap]
rs6724834	0.87[JPT][hapmap]
rs6726061	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6733319	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6746029	0.87[JPT][hapmap]
rs723683	0.87[JPT][hapmap]
rs73071071	0.96[ASN][1000 genomes]
rs73071085	0.96[ASN][1000 genomes]
rs741006	0.87[JPT][hapmap]
rs741007	0.86[JPT][hapmap]
rs7594601	0.87[JPT][hapmap]
rs906831	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9288410	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs962475	0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs994862	0.87[JPT][hapmap]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210460600-210477400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:210465800-210477200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:210465800-210477800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:210466400-210476400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:210467800-210476400	Weak transcription	Fetal Brain Female	brain
6	chr2:210469800-210478600	Weak transcription	Brain Germinal Matrix	brain
7	chr2:210474000-210481400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:210474200-210476800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr2:210474400-210476600	Genic enhancers	Cortex derived primary cultured neurospheres	brain
10	chr2:210474800-210476800	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:210475000-210477600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:210475200-210477400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr2:210475200-210478600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr2:210475400-210478200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr2:210475600-210478800	Enhancers	HUES64 Cell Line	embryonic stem cell

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