Variant report

Variant	rs1509468
Chromosome Location	chr2:210512176-210512177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 166 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:165)

rs_ID	r²[population]
rs10165558	0.97[ASN][1000 genomes]
rs10169017	0.92[ASN][1000 genomes]
rs10172200	0.85[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs10183590	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10183604	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10189911	0.96[ASN][1000 genomes]
rs10193321	0.92[ASN][1000 genomes]
rs10196314	0.85[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs10196600	0.85[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs10198751	0.81[ASN][1000 genomes]
rs10206817	0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs10490021	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10804176	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10932305	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11677975	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11680007	0.81[JPT][hapmap]
rs11680964	0.81[JPT][hapmap]
rs11682692	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11687043	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11691800	0.87[ASN][1000 genomes]
rs11691894	0.87[ASN][1000 genomes]
rs11692075	0.85[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs11692345	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11692608	0.81[JPT][hapmap]
rs11898077	0.87[EUR][1000 genomes]
rs12105654	0.83[EUR][1000 genomes]
rs12105660	0.81[EUR][1000 genomes]
rs12613705	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12614031	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12615372	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs12616589	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12618080	0.91[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs12619253	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12619409	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12620654	0.88[JPT][hapmap]
rs12622305	0.82[JPT][hapmap]
rs13385585	0.85[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs13409134	0.87[ASN][1000 genomes]
rs13419929	0.87[JPT][hapmap]
rs13422521	0.89[ASN][1000 genomes]
rs13423127	0.85[ASN][1000 genomes]
rs1476876	0.81[JPT][hapmap]
rs1476877	0.82[JPT][hapmap]
rs1509465	0.88[JPT][hapmap]
rs1509469	0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1509470	0.92[ASN][1000 genomes]
rs16843329	0.93[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs16843351	0.84[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs16843354	0.92[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs16843360	0.92[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs16843382	0.92[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16843421	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16843453	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16843515	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16843544	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16843614	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16843618	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16843626	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16843651	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs169636	0.81[JPT][hapmap]
rs2048250	0.88[JPT][hapmap]
rs2191910	0.85[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs2215624	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2215625	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2239552	0.92[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2239553	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2239672	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2268042	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2268044	0.85[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs2268045	0.85[ASN][1000 genomes]
rs2271252	0.92[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs2284359	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2284360	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2286849	0.85[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs2286850	0.92[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs2300154	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2366112	0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs2663647	0.89[ASN][1000 genomes]
rs2663648	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs2663649	0.93[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs2663650	0.90[ASN][1000 genomes]
rs2663651	0.93[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs2663653	0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs2663658	0.86[ASN][1000 genomes]
rs2663659	0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs2710474	0.81[ASN][1000 genomes]
rs2710475	0.81[ASN][1000 genomes]
rs2710477	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2710479	0.92[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs2710480	0.84[ASN][1000 genomes]
rs2710482	0.92[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs2710486	0.88[JPT][hapmap]
rs28435689	0.87[ASN][1000 genomes]
rs28666486	0.87[ASN][1000 genomes]
rs28758270	0.87[ASN][1000 genomes]
rs288079	0.82[JPT][hapmap]
rs288081	0.82[JPT][hapmap]
rs288087	0.82[JPT][hapmap]
rs34455059	0.83[ASN][1000 genomes]
rs34850994	0.81[ASN][1000 genomes]
rs35409969	0.83[ASN][1000 genomes]
rs3738935	0.92[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs3754597	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3768810	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3768811	0.85[ASN][1000 genomes]
rs3768813	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3768814	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3768815	0.85[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs3768816	0.85[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs3768820	0.87[ASN][1000 genomes]
rs3768821	0.85[ASN][1000 genomes]
rs3768822	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs3768823	0.87[ASN][1000 genomes]
rs3768826	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3768827	0.89[ASN][1000 genomes]
rs3768828	0.89[ASN][1000 genomes]
rs3768830	0.89[ASN][1000 genomes]
rs3768832	0.85[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs3768833	0.92[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs3768834	0.92[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs3768835	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3820746	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3820748	0.92[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs3886931	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4673486	0.92[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs56659802	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56775639	0.83[ASN][1000 genomes]
rs56825045	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56853570	0.81[ASN][1000 genomes]
rs57542539	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57853945	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58295121	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58525719	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58636345	0.81[ASN][1000 genomes]
rs58779755	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59032380	0.83[ASN][1000 genomes]
rs59155421	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59555743	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60138527	0.92[ASN][1000 genomes]
rs61333809	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61420319	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6709925	0.92[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs6717554	0.85[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs6720659	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6724834	0.85[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs6726061	0.88[JPT][hapmap]
rs6733319	0.88[JPT][hapmap]
rs6742314	0.81[JPT][hapmap]
rs6746029	0.92[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs723683	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs73071071	0.81[ASN][1000 genomes]
rs73071085	0.81[ASN][1000 genomes]
rs73074733	0.87[EUR][1000 genomes]
rs741006	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs741007	0.92[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs7564369	0.81[JPT][hapmap]
rs7567257	0.89[ASN][1000 genomes]
rs7594601	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7596811	0.89[ASN][1000 genomes]
rs906831	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs9288410	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs962475	0.93[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs975551	0.81[JPT][hapmap]
rs975552	0.82[JPT][hapmap]
rs994862	0.85[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754281	chr2:210484777-210543711	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210494800-210517800	Weak transcription	Aorta	Aorta
2	chr2:210501000-210517800	Weak transcription	Fetal Brain Female	brain
3	chr2:210501200-210516200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:210501800-210517800	Weak transcription	Brain Germinal Matrix	brain
5	chr2:210503600-210517800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr2:210507800-210517800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr2:210507800-210525800	Weak transcription	NH-A	brain
8	chr2:210508000-210513200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr2:210508000-210519000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:210508000-210527800	Weak transcription	HUVEC	blood vessel
11	chr2:210508400-210527800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:210508600-210512200	Weak transcription	HMEC	breast
13	chr2:210509400-210515800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:210509600-210517800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr2:210510400-210513200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:210511400-210513400	Strong transcription	Cortex derived primary cultured neurospheres	brain

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