Variant report

Variant	rs150954754
Chromosome Location	chr20:23027373-23027374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23024367..23027840-chr20:23028206..23030938,4	MCF-7	breast:
2	chr20:23025165..23029019-chr20:23031172..23033319,4	K562	blood:
3	chr20:22900035..22903023-chr20:23024141..23027571,3	MCF-7	breast:
4	chr20:22902552..22904666-chr20:23025197..23027691,2	MCF-7	breast:
5	chr20:23025358..23028275-chr20:23031819..23034490,2	K562	blood:

Variant related genes	Relation type
ENSG00000178726	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv482065	chr20:23026271-23030301	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Weak transcription	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23016200-23028200	Weak transcription	Aorta	Aorta
2	chr20:23024200-23028200	Weak transcription	Pancreas	Pancrea
3	chr20:23024600-23031400	Weak transcription	K562	blood
4	chr20:23025800-23028000	Weak transcription	Spleen	Spleen
5	chr20:23025800-23028400	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr20:23026000-23032400	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr20:23026400-23027600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr20:23026400-23027600	Bivalent Enhancer	Fetal Muscle Leg	muscle
9	chr20:23026400-23028400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
10	chr20:23026600-23027400	Flanking Active TSS	A549	lung
11	chr20:23026600-23027600	Active TSS	Adipose Nuclei	Adipose
12	chr20:23026600-23028200	Enhancers	Stomach Mucosa	stomach
13	chr20:23026600-23029600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
14	chr20:23026600-23030400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr20:23026800-23027400	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr20:23026800-23027400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
17	chr20:23026800-23027600	Flanking Active TSS	NHDF-Ad	bronchial
18	chr20:23026800-23028000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr20:23026800-23028000	Enhancers	Placenta	Placenta
20	chr20:23026800-23028200	Active TSS	Right Ventricle	heart
21	chr20:23026800-23028200	Enhancers	HMEC	breast
22	chr20:23026800-23028400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr20:23026800-23029000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
24	chr20:23026800-23032000	Active TSS	Left Ventricle	heart
25	chr20:23027000-23027400	Bivalent Enhancer	Brain Hippocampus Middle	brain
26	chr20:23027000-23027400	Bivalent Enhancer	Fetal Heart	heart
27	chr20:23027000-23027400	Flanking Active TSS	Placenta Amnion	Placenta Amnion
28	chr20:23027000-23027400	Flanking Active TSS	Psoas Muscle	Psoas
29	chr20:23027000-23027400	Flanking Active TSS	Right Atrium	heart
30	chr20:23027000-23027800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr20:23027000-23027800	Active TSS	Duodenum Mucosa	Duodenum
32	chr20:23027000-23027800	Enhancers	Lung	lung
33	chr20:23027000-23028000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
34	chr20:23027000-23028000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr20:23027000-23028400	Active TSS	Gastric	stomach
36	chr20:23027000-23029200	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
37	chr20:23027000-23029600	Flanking Active TSS	NHEK	skin
38	chr20:23027200-23027400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
39	chr20:23027200-23027400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr20:23027200-23027400	Bivalent/Poised TSS	Brain Anterior Caudate	brain
41	chr20:23027200-23027400	Flanking Active TSS	Esophagus	oesophagus
42	chr20:23027200-23027400	Flanking Active TSS	HSMMtube	muscle
43	chr20:23027200-23027600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr20:23027200-23027600	Enhancers	HSMM	muscle
45	chr20:23027200-23028200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr20:23027200-23028400	Bivalent/Poised TSS	NH-A	brain
47	chr20:23027200-23028600	Bivalent Enhancer	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links