Variant report

Variant	rs150957
Chromosome Location	chr14:70528509-70528510
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12435978	0.81[CHB][hapmap];0.85[ASN][1000 genomes]
rs28710300	0.82[ASN][1000 genomes]
rs3742915	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs61151703	0.85[ASN][1000 genomes]
rs7141091	0.81[CHB][hapmap];0.87[ASN][1000 genomes]
rs7142591	0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs7152295	0.84[ASN][1000 genomes]
rs8014694	0.81[CHB][hapmap];0.85[ASN][1000 genomes]
rs9944057	0.82[CHB][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70512800-70535600	Weak transcription	Psoas Muscle	Psoas
2	chr14:70514600-70531200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr14:70526400-70549000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:70526800-70529400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:70527000-70534600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:70527600-70528600	Enhancers	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links