Variant report

Variant	rs1510136
Chromosome Location	chr4:143882545-143882546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143881105..143883700-chr4:144027796..144029991,2	MCF-7	breast:

Extended variants
information (count: 170 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:168)

rs_ID	r²[population]
rs10003726	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10004713	0.85[EUR][1000 genomes]
rs10010316	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10011348	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10014390	0.83[EUR][1000 genomes]
rs10017013	0.85[EUR][1000 genomes]
rs10017804	0.85[EUR][1000 genomes]
rs10019031	0.84[EUR][1000 genomes]
rs10024265	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10026166	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10028292	0.83[EUR][1000 genomes]
rs10032057	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10032156	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10033548	0.83[EUR][1000 genomes]
rs10034074	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10049511	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10050319	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10084818	0.85[EUR][1000 genomes]
rs1012011	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1012012	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10212852	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10213025	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10519675	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11932563	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11936427	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11936467	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11938835	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11943509	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11947590	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13101590	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13101986	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13114894	0.85[EUR][1000 genomes]
rs13115045	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13116365	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13122950	0.84[EUR][1000 genomes]
rs13124363	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13126927	0.84[EUR][1000 genomes]
rs13128465	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13139051	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13139834	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13140271	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13141166	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13141176	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13145393	0.85[EUR][1000 genomes]
rs13147030	0.84[EUR][1000 genomes]
rs13147901	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13151684	0.84[EUR][1000 genomes]
rs13435685	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1372237	0.85[EUR][1000 genomes]
rs1372238	0.81[CHB][hapmap];0.85[EUR][1000 genomes]
rs1372239	0.81[CHB][hapmap];0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs1441414	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1441420	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1441421	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1441423	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1510134	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1510137	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1510139	0.85[EUR][1000 genomes]
rs1588407	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1605953	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1605954	0.84[EUR][1000 genomes]
rs1605955	0.84[EUR][1000 genomes]
rs17017012	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17017081	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17678304	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1876938	0.85[EUR][1000 genomes]
rs1876939	0.90[CHB][hapmap];0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs1899319	0.85[EUR][1000 genomes]
rs1912393	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2003851	0.85[EUR][1000 genomes]
rs2083619	0.85[EUR][1000 genomes]
rs2120843	0.84[EUR][1000 genomes]
rs2120844	0.84[EUR][1000 genomes]
rs2136644	0.94[CEU][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2166187	0.84[EUR][1000 genomes]
rs2322908	0.84[EUR][1000 genomes]
rs28390284	0.84[EUR][1000 genomes]
rs28404663	0.84[EUR][1000 genomes]
rs28460827	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28493626	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28497592	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28516045	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28560068	0.85[EUR][1000 genomes]
rs28577925	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28603287	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28609754	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28625957	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28693771	0.85[EUR][1000 genomes]
rs28749775	0.84[EUR][1000 genomes]
rs28789215	0.85[EUR][1000 genomes]
rs28814581	0.84[EUR][1000 genomes]
rs28814625	0.84[EUR][1000 genomes]
rs28849788	0.84[EUR][1000 genomes]
rs28850637	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28854016	0.84[EUR][1000 genomes]
rs34011238	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34596213	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34815588	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34959108	0.84[EUR][1000 genomes]
rs35582432	0.83[EUR][1000 genomes]
rs35668471	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4690706	0.83[EUR][1000 genomes]
rs4690708	0.84[EUR][1000 genomes]
rs4690709	0.84[EUR][1000 genomes]
rs4690711	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4690712	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4690733	0.84[EUR][1000 genomes]
rs4690734	0.84[EUR][1000 genomes]
rs4690735	0.84[EUR][1000 genomes]
rs4690736	0.85[EUR][1000 genomes]
rs4690738	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4690739	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4690740	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4690744	0.94[CEU][hapmap];0.93[JPT][hapmap];0.94[EUR][1000 genomes]
rs56027920	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56283150	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62330374	0.85[EUR][1000 genomes]
rs6537135	0.83[EUR][1000 genomes]
rs6537136	0.85[EUR][1000 genomes]
rs66682110	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6815888	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6820975	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6822869	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6826496	0.85[EUR][1000 genomes]
rs6827913	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6833501	0.83[EUR][1000 genomes]
rs6833521	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6834625	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6834860	0.91[EUR][1000 genomes]
rs6837806	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6840593	0.80[EUR][1000 genomes]
rs6845018	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6847097	0.85[EUR][1000 genomes]
rs716878	0.85[EUR][1000 genomes]
rs72717312	0.81[ASN][1000 genomes]
rs732600	0.85[EUR][1000 genomes]
rs732601	0.85[EUR][1000 genomes]
rs7655380	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7656332	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7660391	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7660803	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7666854	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7668116	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7668378	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7668605	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7670901	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7673332	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7681654	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7683234	0.84[EUR][1000 genomes]
rs7683834	0.84[EUR][1000 genomes]
rs7688031	0.84[EUR][1000 genomes]
rs7689077	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7689462	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7690592	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7691325	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7692119	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7692881	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7696326	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699632	0.82[EUR][1000 genomes]
rs9308153	0.84[EUR][1000 genomes]
rs9308154	0.85[EUR][1000 genomes]
rs9308155	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9308156	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9308157	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9308162	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9683718	0.84[EUR][1000 genomes]
rs9884401	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9999108	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880175	chr4:143779613-143892252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830102	chr4:143820268-143953611	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143879000-143882800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:143880200-143883400	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr4:143880400-143884600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr4:143880600-143882600	Enhancers	Fetal Lung	lung
5	chr4:143880600-143882600	Enhancers	Stomach Smooth Muscle	stomach
6	chr4:143881200-143882800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:143881200-143882800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:143881200-143882800	Enhancers	Fetal Heart	heart
9	chr4:143881200-143883600	Enhancers	Rectal Smooth Muscle	rectum
10	chr4:143881200-143883800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr4:143881400-143883400	Enhancers	Colon Smooth Muscle	Colon
12	chr4:143881600-143882600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr4:143881600-143883400	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr4:143881800-143883400	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr4:143881800-143884400	Enhancers	Primary hematopoietic stem cells	blood
16	chr4:143882000-143882600	Enhancers	Brain Substantia Nigra	brain
17	chr4:143882000-143882600	Enhancers	Fetal Muscle Leg	muscle
18	chr4:143882000-143882600	Enhancers	Ovary	ovary
19	chr4:143882000-143882600	Enhancers	HSMMtube	muscle
20	chr4:143882200-143883000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:143882400-143882600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:143882400-143882800	Enhancers	Primary B cells from cord blood	blood
23	chr4:143882400-143882800	Weak transcription	Brain Hippocampus Middle	brain
24	chr4:143882400-143883200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr4:143882400-143883400	Enhancers	Brain Anterior Caudate	brain
26	chr4:143882400-143883800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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