Variant report

Variant	rs1510584
Chromosome Location	chr4:86762295-86762296
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10002566	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10008894	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10031413	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3796625	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs61138111	0.86[ASN][1000 genomes]
rs73833889	0.86[ASN][1000 genomes]
rs882639	0.83[EUR][1000 genomes]
rs896656	0.87[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv879518	chr4:86739805-86778943	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv470049	chr4:86750699-86776488	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86737600-86763200	Weak transcription	Primary B cells from cord blood	blood
2	chr4:86749400-86787600	Weak transcription	Pancreas	Pancrea
3	chr4:86749600-86763600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr4:86750000-86809200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:86758000-86763600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr4:86758600-86763800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr4:86759000-86762400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr4:86759000-86763400	Weak transcription	NHLF	lung
9	chr4:86759000-86763400	Weak transcription	Osteobl	bone
10	chr4:86759400-86763400	Weak transcription	Adipose Nuclei	Adipose
11	chr4:86759400-86763800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:86760000-86782600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:86760200-86763200	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr4:86760200-86763400	Weak transcription	Fetal Kidney	kidney
15	chr4:86761200-86763200	Enhancers	HUVEC	blood vessel
16	chr4:86761600-86763200	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr4:86761800-86762600	Enhancers	Brain Germinal Matrix	brain
18	chr4:86761800-86762800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr4:86761800-86763200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:86761800-86763200	Weak transcription	Fetal Muscle Leg	muscle
21	chr4:86761800-86763200	Weak transcription	Stomach Mucosa	stomach
22	chr4:86761800-86763200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr4:86761800-86763400	Weak transcription	HSMM	muscle
24	chr4:86761800-86763400	Weak transcription	HSMMtube	muscle
25	chr4:86761800-86763800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr4:86761800-86763800	Weak transcription	Left Ventricle	heart
27	chr4:86761800-86778800	Weak transcription	Fetal Lung	lung
28	chr4:86762000-86763200	Weak transcription	Rectal Smooth Muscle	rectum
29	chr4:86762000-86763800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:86762200-86763400	Weak transcription	NHDF-Ad	bronchial
31	chr4:86762200-86769200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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