Variant report

Variant	rs151258493
Chromosome Location	chr7:101480265-101480266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101478135..101485394-chr7:101496220..101502463,10	K562	blood:
2	chr7:101476458..101480622-chr7:101482401..101486770,4	K562	blood:
3	chr7:101456314..101463577-chr7:101474956..101483680,15	K562	blood:
4	chr7:101477313..101480622-chr7:101482401..101485267,3	K562	blood:
5	chr7:101468629..101471194-chr7:101478234..101481000,2	K562	blood:
6	chr7:101477818..101480312-chr7:101481428..101485142,3	MCF-7	breast:
7	chr3:64004529..64006827-chr7:101477870..101480466,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163636	Chromatin interaction
ENSG00000272181	Chromatin interaction
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv521041	chr7:101458144-101496391	ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	esv3423984	chr7:101479951-101480298	Weak transcription Enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101461200-101486200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:101461800-101489200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr7:101462200-101482200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:101462200-101484200	Weak transcription	Fetal Kidney	kidney
5	chr7:101463800-101489800	Weak transcription	NHEK	skin
6	chr7:101464600-101488800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:101465800-101482000	Weak transcription	K562	blood
8	chr7:101466800-101482200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:101466800-101489800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr7:101466800-101498400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:101467000-101480600	Weak transcription	HSMM	muscle
12	chr7:101467000-101482000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr7:101467200-101481800	Weak transcription	Liver	Liver
14	chr7:101467200-101490400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:101467400-101490400	Weak transcription	Fetal Lung	lung
16	chr7:101468800-101486600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr7:101469000-101483000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr7:101469000-101486600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr7:101469000-101489800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:101469200-101489800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr7:101469400-101487000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr7:101469400-101489800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr7:101469600-101487000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr7:101469600-101490000	Weak transcription	HepG2	liver
25	chr7:101470000-101482400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr7:101470000-101496600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr7:101470200-101482200	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr7:101470200-101482200	Weak transcription	Ovary	ovary
29	chr7:101472000-101486800	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr7:101472000-101490400	Weak transcription	Osteobl	bone
31	chr7:101472400-101489400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr7:101472600-101481800	Weak transcription	Right Atrium	heart
33	chr7:101472600-101482000	Weak transcription	Fetal Heart	heart
34	chr7:101472800-101488600	Weak transcription	Hela-S3	cervix
35	chr7:101473400-101490600	Weak transcription	Primary T cells from cord blood	blood
36	chr7:101473600-101482200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr7:101473800-101481800	Weak transcription	Lung	lung
38	chr7:101474600-101487000	Weak transcription	Dnd41	blood
39	chr7:101474800-101489800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr7:101475000-101482000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr7:101475000-101488600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr7:101475600-101481000	Weak transcription	Fetal Intestine Large	intestine
43	chr7:101475600-101482200	Weak transcription	Fetal Thymus	thymus
44	chr7:101475600-101488400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr7:101475600-101488800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr7:101475800-101481400	Weak transcription	Placenta	Placenta
47	chr7:101475800-101482000	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr7:101475800-101487000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr7:101476200-101482200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr7:101476200-101482400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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