Variant report

Variant	rs1515278
Chromosome Location	chr2:180503273-180503274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10497544	1.00[CEU][hapmap];0.94[MEX][hapmap];0.93[AMR][1000 genomes]
rs11687033	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs11688746	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs12693196	0.89[MEX][hapmap]
rs13009601	1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[MEX][hapmap];0.92[ASN][1000 genomes]
rs1356064	0.87[YRI][hapmap]
rs1356065	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1356066	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1399686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1399687	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1515274	0.82[CHD][hapmap];0.94[MEX][hapmap]
rs1515277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1554103	0.82[JPT][hapmap]
rs16866822	1.00[MEX][hapmap]
rs16866832	0.89[MEX][hapmap]
rs16866842	1.00[MEX][hapmap]
rs16866876	1.00[CEU][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28792088	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2887110	0.89[MEX][hapmap]
rs3106693	0.82[JPT][hapmap]
rs3106694	0.82[JPT][hapmap]
rs4600606	0.86[ASN][1000 genomes]
rs55935953	0.89[AMR][1000 genomes]
rs62176301	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62176328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62176331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62176332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62176333	0.94[ASN][1000 genomes]
rs62176334	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6741320	0.82[JPT][hapmap]
rs6741622	0.86[ASN][1000 genomes]
rs6756679	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7581924	1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[MEX][hapmap];0.83[ASN][1000 genomes]
rs9750247	1.00[CHB][hapmap];0.90[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180502200-180510200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:180502400-180509600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:180502400-180511600	Weak transcription	Fetal Heart	heart
4	chr2:180503000-180503600	Enhancers	HSMMtube	muscle

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