Variant report

Variant	rs1515286
Chromosome Location	chr2:180543780-180543781
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10199992	0.83[ASN][1000 genomes]
rs1033213	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10497548	0.89[ASN][1000 genomes]
rs10803927	0.89[ASN][1000 genomes]
rs13035546	0.94[ASN][1000 genomes]
rs1515291	0.83[ASN][1000 genomes]
rs17821260	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1877941	0.96[ASN][1000 genomes]
rs2037112	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2276573	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3106718	0.89[ASN][1000 genomes]
rs3106720	0.89[ASN][1000 genomes]
rs3112932	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3112935	0.89[ASN][1000 genomes]
rs34227133	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62175185	0.83[ASN][1000 genomes]
rs62175186	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6718207	0.95[ASN][1000 genomes]
rs7557247	0.88[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180540400-180571200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180541200-180543800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:180541200-180544000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:180543400-180546800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:180543600-180545800	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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