Variant report

Variant	rs1515313
Chromosome Location	chr2:180455824-180455825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10048645	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10189196	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10189808	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11683510	0.84[EUR][1000 genomes]
rs11695089	0.84[EUR][1000 genomes]
rs12612821	0.80[ASN][1000 genomes]
rs12615265	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12615343	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12693195	0.81[EUR][1000 genomes]
rs12693196	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12986652	0.90[EUR][1000 genomes]
rs12987486	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12991282	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13000199	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13001067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13014868	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs13026689	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13028216	0.90[EUR][1000 genomes]
rs13029050	0.90[EUR][1000 genomes]
rs13411084	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13411180	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1515304	0.81[EUR][1000 genomes]
rs1515312	0.81[EUR][1000 genomes]
rs1515314	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1533387	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1606813	0.90[EUR][1000 genomes]
rs16866810	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16866814	0.84[ASN][1000 genomes]
rs16866815	0.84[ASN][1000 genomes]
rs16866819	0.90[EUR][1000 genomes]
rs16866822	0.93[ASN][1000 genomes]
rs16866823	0.90[EUR][1000 genomes]
rs16866832	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16866834	0.90[EUR][1000 genomes]
rs16866842	0.91[ASN][1000 genomes]
rs16866850	0.91[ASN][1000 genomes]
rs16866857	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17818050	0.82[ASN][1000 genomes]
rs2176061	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2222031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2887110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34313722	0.84[EUR][1000 genomes]
rs34376589	0.81[EUR][1000 genomes]
rs34528783	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34545498	0.84[EUR][1000 genomes]
rs34663462	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35439427	0.90[EUR][1000 genomes]
rs35664499	0.90[EUR][1000 genomes]
rs36017881	0.80[ASN][1000 genomes]
rs36060902	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61432525	0.90[ASN][1000 genomes]
rs6721295	0.81[EUR][1000 genomes]
rs6728581	0.83[ASN][1000 genomes]
rs71425640	0.89[EUR][1000 genomes]
rs73973307	0.90[EUR][1000 genomes]
rs7425514	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7581924	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7593595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7601398	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs908287	0.85[ASN][1000 genomes]
rs9288040	0.81[EUR][1000 genomes]
rs951427	0.90[EUR][1000 genomes]
rs969231	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs988289	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs988290	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875471	chr2:180448523-180469778	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:180449800-180456600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr2:180450000-180456400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:180453600-180456400	Weak transcription	Psoas Muscle	Psoas
5	chr2:180454200-180456200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr2:180454600-180456200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr2:180455000-180456200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:180455000-180456400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr2:180455400-180456400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr2:180455400-180457200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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