Variant report

Variant	rs151642
Chromosome Location	chr6:80705560-80705561
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10943681	0.94[ASN][1000 genomes]
rs10943682	0.91[ASN][1000 genomes]
rs10943688	0.82[ASN][1000 genomes]
rs1205578	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12526265	0.95[ASN][1000 genomes]
rs1410521	0.82[ASN][1000 genomes]
rs1410522	0.82[ASN][1000 genomes]
rs151583	0.82[EUR][1000 genomes]
rs151587	0.81[EUR][1000 genomes]
rs151641	0.82[EUR][1000 genomes]
rs151644	0.82[EUR][1000 genomes]
rs151645	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs151648	0.81[EUR][1000 genomes]
rs151654	0.82[EUR][1000 genomes]
rs151656	0.82[EUR][1000 genomes]
rs151657	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs151660	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs151665	0.81[EUR][1000 genomes]
rs181177	0.81[EUR][1000 genomes]
rs1897870	0.93[ASN][1000 genomes]
rs2181070	0.91[ASN][1000 genomes]
rs2295838	0.95[ASN][1000 genomes]
rs2295840	0.93[ASN][1000 genomes]
rs2295841	0.91[ASN][1000 genomes]
rs239495	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs239496	0.83[EUR][1000 genomes]
rs239497	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs239500	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs239501	0.82[EUR][1000 genomes]
rs239502	0.82[EUR][1000 genomes]
rs239515	0.81[EUR][1000 genomes]
rs239552	0.82[EUR][1000 genomes]
rs239553	0.82[EUR][1000 genomes]
rs239554	0.82[EUR][1000 genomes]
rs239555	0.82[EUR][1000 genomes]
rs239558	0.82[EUR][1000 genomes]
rs239560	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs239562	0.82[EUR][1000 genomes]
rs239563	0.82[EUR][1000 genomes]
rs239566	0.82[EUR][1000 genomes]
rs239567	0.82[EUR][1000 genomes]
rs239568	0.82[EUR][1000 genomes]
rs239569	0.81[EUR][1000 genomes]
rs239570	0.81[EUR][1000 genomes]
rs239571	0.81[EUR][1000 genomes]
rs239572	0.82[EUR][1000 genomes]
rs239573	0.83[EUR][1000 genomes]
rs239574	0.82[EUR][1000 genomes]
rs239577	0.81[EUR][1000 genomes]
rs239578	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs239579	0.81[EUR][1000 genomes]
rs239580	0.81[EUR][1000 genomes]
rs239581	0.80[EUR][1000 genomes]
rs240212	0.82[EUR][1000 genomes]
rs240214	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs240216	0.82[EUR][1000 genomes]
rs240217	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs240218	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs240225	0.82[EUR][1000 genomes]
rs240226	0.82[EUR][1000 genomes]
rs240228	0.82[EUR][1000 genomes]
rs240229	0.82[EUR][1000 genomes]
rs240237	0.82[EUR][1000 genomes]
rs2757084	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2769337	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3799497	0.93[ASN][1000 genomes]
rs3812151	0.82[ASN][1000 genomes]
rs3828761	0.81[EUR][1000 genomes]
rs402128	0.82[EUR][1000 genomes]
rs465480	0.81[EUR][1000 genomes]
rs465483	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4706108	0.86[ASN][1000 genomes]
rs4706826	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs587984	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs652752	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs666040	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6923330	0.84[EUR][1000 genomes]
rs6925415	0.82[ASN][1000 genomes]
rs9294168	0.91[ASN][1000 genomes]
rs9341801	0.93[ASN][1000 genomes]
rs9341802	0.91[ASN][1000 genomes]
rs9341803	0.90[ASN][1000 genomes]
rs9343961	0.90[ASN][1000 genomes]
rs9352790	0.91[ASN][1000 genomes]
rs9352797	0.82[ASN][1000 genomes]
rs9359406	0.90[ASN][1000 genomes]
rs9448877	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs151642	ELOVL4	cis	Artery Tibial	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80703800-80713200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:80704200-80712600	Weak transcription	Fetal Thymus	thymus
3	chr6:80705000-80712600	Weak transcription	Thymus	Thymus
4	chr6:80705200-80706000	Enhancers	HepG2	liver

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