Variant report

Variant	rs151645
Chromosome Location	chr6:80701403-80701404
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 132 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs10943681	0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs10943682	0.81[ASN][1000 genomes]
rs10943688	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs1205577	0.81[EUR][1000 genomes]
rs1205578	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1205579	0.83[CEU][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs12193074	0.80[EUR][1000 genomes]
rs12526265	0.85[ASN][1000 genomes]
rs1410521	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs1410522	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs151583	0.83[EUR][1000 genomes]
rs151587	0.82[EUR][1000 genomes]
rs151641	0.83[EUR][1000 genomes]
rs151642	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs151644	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs151646	0.80[ASN][1000 genomes]
rs151648	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs151649	0.80[ASN][1000 genomes]
rs151654	0.83[EUR][1000 genomes]
rs151656	0.83[EUR][1000 genomes]
rs151657	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs151658	0.86[CEU][hapmap];0.89[JPT][hapmap]
rs151660	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs151661	0.81[EUR][1000 genomes]
rs151662	0.81[EUR][1000 genomes]
rs151663	0.86[CEU][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs151664	0.86[CEU][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs151665	0.82[EUR][1000 genomes]
rs181177	0.83[EUR][1000 genomes]
rs1897870	0.91[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1927425	0.87[CHB][hapmap]
rs1927426	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs2181070	0.81[ASN][1000 genomes]
rs2251783	0.81[EUR][1000 genomes]
rs2251790	0.81[EUR][1000 genomes]
rs2295838	0.91[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs2295840	0.83[ASN][1000 genomes]
rs2295841	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs239494	0.80[ASN][1000 genomes]
rs239495	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs239496	0.84[EUR][1000 genomes]
rs239497	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs239500	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs239501	0.83[EUR][1000 genomes]
rs239502	0.83[EUR][1000 genomes]
rs239511	0.81[EUR][1000 genomes]
rs239515	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs239552	0.85[CEU][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs239553	0.83[EUR][1000 genomes]
rs239554	0.85[CEU][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs239555	0.86[CEU][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs239558	0.86[CEU][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs239560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs239562	0.83[EUR][1000 genomes]
rs239563	0.83[EUR][1000 genomes]
rs239566	0.83[EUR][1000 genomes]
rs239567	0.83[EUR][1000 genomes]
rs239568	0.83[EUR][1000 genomes]
rs239569	0.83[EUR][1000 genomes]
rs239570	0.82[EUR][1000 genomes]
rs239571	0.83[EUR][1000 genomes]
rs239572	0.86[CEU][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs239573	0.84[EUR][1000 genomes]
rs239574	0.83[EUR][1000 genomes]
rs239577	0.82[EUR][1000 genomes]
rs239578	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs239579	0.82[EUR][1000 genomes]
rs239580	0.82[EUR][1000 genomes]
rs239581	0.82[EUR][1000 genomes]
rs239582	0.85[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs239583	0.94[JPT][hapmap]
rs239584	0.81[EUR][1000 genomes]
rs239586	0.81[EUR][1000 genomes]
rs239587	0.85[CEU][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs239588	0.81[EUR][1000 genomes]
rs239589	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs240212	0.86[CEU][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs240213	0.89[CEU][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes]
rs240214	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs240216	0.86[CEU][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs240217	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs240218	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs240225	0.83[EUR][1000 genomes]
rs240226	0.83[EUR][1000 genomes]
rs240228	0.86[CEU][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs240229	0.86[CEU][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs240237	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs240238	0.80[ASN][1000 genomes]
rs2757084	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2769337	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3799497	0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs3828761	0.81[EUR][1000 genomes]
rs402128	0.83[EUR][1000 genomes]
rs465480	0.82[EUR][1000 genomes]
rs465483	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4706108	0.93[ASN][1000 genomes]
rs4706826	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4706827	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs587984	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61794	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs61795	0.86[CEU][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs61796	0.86[CEU][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs621506	0.81[EUR][1000 genomes]
rs642745	0.81[EUR][1000 genomes]
rs652752	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs653665	0.86[CEU][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs666040	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs667871	0.81[EUR][1000 genomes]
rs669278	0.81[EUR][1000 genomes]
rs672372	0.81[EUR][1000 genomes]
rs681405	0.81[EUR][1000 genomes]
rs681435	0.81[EUR][1000 genomes]
rs681931	0.81[EUR][1000 genomes]
rs683167	0.81[EUR][1000 genomes]
rs6917725	0.80[EUR][1000 genomes]
rs6923330	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs6924930	0.80[EUR][1000 genomes]
rs6934606	0.80[EUR][1000 genomes]
rs6935728	0.80[EUR][1000 genomes]
rs9294168	0.81[ASN][1000 genomes]
rs9341801	0.91[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs9341802	0.81[ASN][1000 genomes]
rs9343959	0.81[EUR][1000 genomes]
rs9343965	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs9352790	0.81[ASN][1000 genomes]
rs9352791	0.80[EUR][1000 genomes]
rs9352793	0.81[EUR][1000 genomes]
rs9359407	0.80[EUR][1000 genomes]
rs9361581	0.80[EUR][1000 genomes]
rs9448876	0.81[EUR][1000 genomes]
rs9448877	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs151645	ELOVL4	cis	Esophagus Muscularis	GTEx
rs151645	ELOVL4	cis	Artery Tibial	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80696800-80702600	Weak transcription	Thymus	Thymus

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