Variant report

Variant	rs151657
Chromosome Location	chr6:80733048-80733049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:80733040..80735460-chr6:80736846..80739439,3	K562	blood:
2	chr6:80731473..80734540-chr6:80736888..80739701,3	K562	blood:
3	chr6:80726819..80729149-chr6:80732452..80734018,2	K562	blood:

Extended variants
information (count: 133 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs10943681	0.92[ASN][1000 genomes]
rs10943682	0.95[ASN][1000 genomes]
rs10943688	0.80[ASN][1000 genomes]
rs1205577	0.82[EUR][1000 genomes]
rs1205578	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1205579	0.82[EUR][1000 genomes]
rs12193074	0.81[EUR][1000 genomes]
rs12526265	0.91[ASN][1000 genomes]
rs1410521	0.80[ASN][1000 genomes]
rs1410522	0.80[ASN][1000 genomes]
rs151583	0.82[EUR][1000 genomes]
rs151587	0.81[EUR][1000 genomes]
rs151641	0.82[EUR][1000 genomes]
rs151642	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs151644	0.82[EUR][1000 genomes]
rs151645	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs151648	0.81[EUR][1000 genomes]
rs151654	0.82[EUR][1000 genomes]
rs151656	0.82[EUR][1000 genomes]
rs151658	0.80[EUR][1000 genomes]
rs151660	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs151661	0.82[EUR][1000 genomes]
rs151662	0.82[EUR][1000 genomes]
rs151663	0.82[EUR][1000 genomes]
rs151664	0.82[EUR][1000 genomes]
rs151665	0.83[EUR][1000 genomes]
rs181177	0.81[EUR][1000 genomes]
rs1897870	0.93[ASN][1000 genomes]
rs2181070	0.95[ASN][1000 genomes]
rs2251783	0.82[EUR][1000 genomes]
rs2251790	0.82[EUR][1000 genomes]
rs2295838	0.91[ASN][1000 genomes]
rs2295840	0.93[ASN][1000 genomes]
rs2295841	0.95[ASN][1000 genomes]
rs239495	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs239496	0.83[EUR][1000 genomes]
rs239497	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs239500	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs239501	0.82[EUR][1000 genomes]
rs239502	0.82[EUR][1000 genomes]
rs239515	0.81[EUR][1000 genomes]
rs239552	0.82[EUR][1000 genomes]
rs239553	0.82[EUR][1000 genomes]
rs239554	0.82[EUR][1000 genomes]
rs239555	0.82[EUR][1000 genomes]
rs239558	0.82[EUR][1000 genomes]
rs239560	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs239562	0.82[EUR][1000 genomes]
rs239563	0.82[EUR][1000 genomes]
rs239566	0.82[EUR][1000 genomes]
rs239567	0.82[EUR][1000 genomes]
rs239568	0.82[EUR][1000 genomes]
rs239569	0.81[EUR][1000 genomes]
rs239570	0.81[EUR][1000 genomes]
rs239571	0.81[EUR][1000 genomes]
rs239572	0.82[EUR][1000 genomes]
rs239573	0.83[EUR][1000 genomes]
rs239574	0.82[EUR][1000 genomes]
rs239577	0.83[EUR][1000 genomes]
rs239578	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs239579	0.83[EUR][1000 genomes]
rs239580	0.83[EUR][1000 genomes]
rs239581	0.82[EUR][1000 genomes]
rs239582	0.82[EUR][1000 genomes]
rs239584	0.82[EUR][1000 genomes]
rs239586	0.82[EUR][1000 genomes]
rs239587	0.81[EUR][1000 genomes]
rs239588	0.82[EUR][1000 genomes]
rs239589	0.82[EUR][1000 genomes]
rs240212	0.82[EUR][1000 genomes]
rs240214	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs240216	0.82[EUR][1000 genomes]
rs240217	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs240218	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs240225	0.82[EUR][1000 genomes]
rs240226	0.82[EUR][1000 genomes]
rs240228	0.82[EUR][1000 genomes]
rs240229	0.82[EUR][1000 genomes]
rs240237	0.82[EUR][1000 genomes]
rs2757084	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2769337	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3799497	0.92[ASN][1000 genomes]
rs3812151	0.80[ASN][1000 genomes]
rs3828761	0.83[EUR][1000 genomes]
rs402128	0.82[EUR][1000 genomes]
rs465480	0.81[EUR][1000 genomes]
rs465483	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4706826	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs587984	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61794	0.82[EUR][1000 genomes]
rs61795	0.81[EUR][1000 genomes]
rs61796	0.82[EUR][1000 genomes]
rs621506	0.82[EUR][1000 genomes]
rs642745	0.82[EUR][1000 genomes]
rs648845	0.80[EUR][1000 genomes]
rs652752	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs653665	0.82[EUR][1000 genomes]
rs666040	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs667871	0.82[EUR][1000 genomes]
rs669278	0.82[EUR][1000 genomes]
rs672372	0.82[EUR][1000 genomes]
rs681405	0.82[EUR][1000 genomes]
rs681435	0.82[EUR][1000 genomes]
rs681931	0.82[EUR][1000 genomes]
rs683167	0.82[EUR][1000 genomes]
rs6917725	0.81[EUR][1000 genomes]
rs6923330	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6924930	0.81[EUR][1000 genomes]
rs6925415	0.86[ASN][1000 genomes]
rs6934606	0.81[EUR][1000 genomes]
rs6935728	0.81[EUR][1000 genomes]
rs9294168	0.95[ASN][1000 genomes]
rs9341801	0.93[ASN][1000 genomes]
rs9341802	0.95[ASN][1000 genomes]
rs9341803	0.93[ASN][1000 genomes]
rs9343959	0.81[EUR][1000 genomes]
rs9343960	0.80[EUR][1000 genomes]
rs9343961	0.93[ASN][1000 genomes]
rs9352790	0.95[ASN][1000 genomes]
rs9352791	0.81[EUR][1000 genomes]
rs9352793	0.81[EUR][1000 genomes]
rs9352794	0.80[EUR][1000 genomes]
rs9352797	0.80[ASN][1000 genomes]
rs9359406	0.93[ASN][1000 genomes]
rs9359407	0.81[EUR][1000 genomes]
rs9361581	0.81[EUR][1000 genomes]
rs9448876	0.82[EUR][1000 genomes]
rs9448877	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9448881	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv5370	chr6:80715351-80751740	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv886306	chr6:80724666-80754346	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv886307	chr6:80724666-80765111	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs151657	ELOVL4	cis	Artery Tibial	GTEx
rs151657	ELOVL4	cis	Esophagus Muscularis	GTEx

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80714800-80738800	Weak transcription	Small Intestine	intestine
2	chr6:80715000-80748000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:80715000-80752200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:80715000-80752400	Weak transcription	Placenta	Placenta
5	chr6:80715200-80734000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:80715200-80734400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:80715200-80739200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr6:80715200-80749600	Weak transcription	Fetal Intestine Small	intestine
9	chr6:80715200-80752000	Weak transcription	Primary B cells from cord blood	blood
10	chr6:80715200-80752200	Weak transcription	Primary T cells from cord blood	blood
11	chr6:80715400-80742200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:80715400-80743200	Weak transcription	Brain Germinal Matrix	brain
13	chr6:80715400-80745400	Weak transcription	Fetal Lung	lung
14	chr6:80715400-80755000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr6:80715400-80756800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:80715600-80739200	Weak transcription	Fetal Stomach	stomach
17	chr6:80715600-80754400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:80715600-80763800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr6:80715800-80733400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:80715800-80753600	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr6:80715800-80753800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr6:80715800-80754400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr6:80716000-80739200	Weak transcription	NHEK	skin
24	chr6:80716000-80743600	Weak transcription	Fetal Heart	heart
25	chr6:80716200-80754600	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:80716800-80753600	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr6:80717400-80739200	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr6:80721600-80760400	Weak transcription	Fetal Kidney	kidney
29	chr6:80721800-80736600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr6:80721800-80742000	Weak transcription	A549	lung
31	chr6:80722200-80755400	Strong transcription	Dnd41	blood
32	chr6:80722400-80741400	Weak transcription	NHDF-Ad	bronchial
33	chr6:80723600-80752200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr6:80724000-80749600	Weak transcription	NHLF	lung
35	chr6:80724800-80741600	Weak transcription	Hela-S3	cervix
36	chr6:80726200-80733600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:80727000-80733600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr6:80727000-80738800	Weak transcription	GM12878-XiMat	blood
39	chr6:80727200-80755200	Weak transcription	Fetal Brain Female	brain
40	chr6:80727400-80738200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr6:80727800-80734000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr6:80730200-80734800	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr6:80730200-80734800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr6:80730200-80749000	Strong transcription	Fetal Thymus	thymus
45	chr6:80730200-80752600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:80730400-80748200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr6:80730400-80753600	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr6:80730400-80753600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:80730600-80734200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr6:80730600-80739200	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links