Variant report

Variant	rs1519858
Chromosome Location	chr8:129878887-129878888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:129872569..129876540-chr8:129878616..129881184,3	K562	blood:
2	chr8:129865860..129869579-chr8:129877876..129880689,4	K562	blood:
3	chr8:129878873..129881112-chr8:129881741..129884417,2	K562	blood:
4	chr8:129868858..129872488-chr8:129878808..129881369,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1519840	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16903647	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16903648	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16903668	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16903677	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16903682	1.00[ASN][1000 genomes]
rs2090682	0.80[AFR][1000 genomes]
rs35208579	0.81[AFR][1000 genomes]
rs35643497	1.00[ASN][1000 genomes]
rs35989243	1.00[ASN][1000 genomes]
rs59460028	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982834	0.95[AFR][1000 genomes]
rs6994591	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014227	1.00[EUR][1000 genomes]
rs7015615	1.00[ASN][1000 genomes]
rs73708224	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73708238	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73708240	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs756123	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817073	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7820704	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821002	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7823984	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7846441	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517445	chr8:129859924-129881299	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129874600-129886200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:129874800-129879000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:129874800-129879200	Weak transcription	HMEC	breast
4	chr8:129874800-129879200	Weak transcription	NHEK	skin
5	chr8:129875000-129879000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr8:129875000-129887000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:129876000-129879000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:129876200-129879000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr8:129876200-129886200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr8:129876400-129879000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:129876400-129879000	Weak transcription	HSMM	muscle
12	chr8:129876400-129879400	Weak transcription	Fetal Stomach	stomach
13	chr8:129876600-129879000	Weak transcription	Osteobl	bone
14	chr8:129876800-129879000	Weak transcription	NHDF-Ad	bronchial
15	chr8:129876800-129879000	Weak transcription	NHLF	lung
16	chr8:129876800-129879200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:129877000-129885000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr8:129878600-129879800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr8:129878600-129880000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:129878800-129879800	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links