Variant report

Variant	rs1520631
Chromosome Location	chr3:34637948-34637949
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12106931	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1470634	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17031937	0.98[EUR][1000 genomes]
rs2049105	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2098398	0.91[AFR][1000 genomes]
rs3914872	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55658868	0.88[EUR][1000 genomes]
rs56122200	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7639501	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7647244	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876685	chr3:34615754-34662157	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1520631	STAC	cis	parietal	SCAN
rs1520631	ZNF860	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34637400-34638600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:34637600-34638800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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