Variant report

Variant	rs1520641
Chromosome Location	chr3:34599556-34599557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11129598	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13074645	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1520644	1.00[AMR][1000 genomes]
rs1851057	0.93[AMR][1000 genomes]
rs2080425	0.86[AMR][1000 genomes]
rs2167041	0.93[AMR][1000 genomes]
rs2167042	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs2336653	0.87[AMR][1000 genomes]
rs4678695	1.00[AMR][1000 genomes]
rs6798617	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7614078	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7629903	0.87[AMR][1000 genomes]
rs918085	0.93[AMR][1000 genomes]
rs9860621	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007906	chr3:34466966-34607465	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34596600-34600800	Weak transcription	Thymus	Thymus
2	chr3:34599400-34599800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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