Variant report

Variant	rs1520643
Chromosome Location	chr3:34690159-34690160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2098398	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2216180	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4678698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647244	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1820420	chr3:34662157-34708263	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
2	esv1822284	chr3:34683998-34692545	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv519548	chr3:34683998-34718800	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv1816528	chr3:34683998-34757534	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34689200-34690200	Enhancers	Dnd41	blood
2	chr3:34689400-34690200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr3:34689800-34690200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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