Variant report

Variant	rs1520888
Chromosome Location	chr11:18266197-18266198
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000134333	Chromatin interaction
ENSG00000110768	Chromatin interaction
ENSG00000134339	Chromatin interaction
ENSG00000200336	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1869782	1.00[AMR][1000 genomes]
rs57504418	1.00[AMR][1000 genomes]
rs73430022	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv428569	chr11:18194030-18350869	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18259600-18266600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:18260000-18278200	Weak transcription	Aorta	Aorta
3	chr11:18265600-18266200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr11:18265600-18267000	Enhancers	GM12878-XiMat	blood
5	chr11:18265600-18267400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:18265600-18268800	Enhancers	HMEC	breast
7	chr11:18265800-18267000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr11:18265800-18267000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr11:18265800-18267200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr11:18265800-18267800	Weak transcription	Stomach Mucosa	stomach
11	chr11:18265800-18268000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:18265800-18268800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:18266000-18267800	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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