Variant report

Variant	rs1523576
Chromosome Location	chr18:30354197-30354198
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12232690	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17738786	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17851892	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62092151	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7232060	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7234849	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7241727	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8084642	0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8086995	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8097599	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9946321	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9954239	0.87[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9959560	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1523576	STK10	trans	cerebellum	SCAN
rs1523576	KLHL14	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30352600-30356000	Weak transcription	Colon Smooth Muscle	Colon
2	chr18:30353000-30354200	Enhancers	Primary B cells from peripheral blood	blood
3	chr18:30353000-30354400	Enhancers	HepG2	liver
4	chr18:30353000-30354800	Enhancers	Fetal Brain Male	brain
5	chr18:30353200-30354200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr18:30353200-30354600	Enhancers	Primary B cells from cord blood	blood
7	chr18:30353400-30354400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
8	chr18:30353400-30354400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr18:30353400-30354800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr18:30353600-30354400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
11	chr18:30353800-30354200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
12	chr18:30353800-30354400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
13	chr18:30353800-30354400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
14	chr18:30353800-30354600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr18:30353800-30355000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
16	chr18:30354000-30354200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
17	chr18:30354000-30354200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
18	chr18:30354000-30354200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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