Variant report

Variant	rs1523577
Chromosome Location	chr18:30342787-30342788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12373178	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs12606442	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12956058	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2140445	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs55737004	0.81[EUR][1000 genomes]
rs715401	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs749676	1.00[JPT][hapmap]
rs8084642	0.86[YRI][hapmap]
rs8097174	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30340400-30343400	Weak transcription	Fetal Brain Male	brain
2	chr18:30341400-30345400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:30341800-30344200	Weak transcription	Fetal Kidney	kidney
4	chr18:30341800-30347200	Enhancers	Primary B cells from cord blood	blood
5	chr18:30342000-30343800	Enhancers	Dnd41	blood
6	chr18:30342200-30343000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr18:30342200-30343200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr18:30342200-30347400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr18:30342400-30344000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr18:30342600-30343000	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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