Variant report

Variant	rs1524557
Chromosome Location	chr3:81892031-81892032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11127740	0.96[CEU][hapmap];0.88[YRI][hapmap]
rs11707026	0.91[CEU][hapmap];0.95[GIH][hapmap]
rs11711024	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11711331	0.86[GIH][hapmap];0.82[TSI][hapmap]
rs11712243	0.83[EUR][1000 genomes]
rs11715625	0.84[EUR][1000 genomes]
rs12152272	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13062741	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13065281	0.91[CEU][hapmap]
rs13072957	0.96[CEU][hapmap];1.00[GIH][hapmap];0.81[MKK][hapmap];0.85[TSI][hapmap]
rs13073613	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13074632	0.80[EUR][1000 genomes]
rs13075250	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13079104	0.83[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13080520	0.96[CEU][hapmap];0.95[GIH][hapmap];0.83[EUR][1000 genomes]
rs13083476	0.83[EUR][1000 genomes]
rs13091492	0.82[EUR][1000 genomes]
rs13092157	0.91[EUR][1000 genomes]
rs13099615	0.95[CEU][hapmap]
rs1464790	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[MKK][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs1464791	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17019299	0.88[EUR][1000 genomes]
rs1851930	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2053805	0.96[CEU][hapmap];0.97[GIH][hapmap];0.85[TSI][hapmap]
rs2229519	0.91[CEU][hapmap];0.95[GIH][hapmap]
rs2691093	0.82[CHD][hapmap]
rs2873054	0.88[EUR][1000 genomes]
rs3755713	0.95[CEU][hapmap];0.97[GIH][hapmap];0.85[MKK][hapmap];0.81[TSI][hapmap]
rs3772882	0.82[GIH][hapmap]
rs3772883	0.82[GIH][hapmap]
rs3772884	0.96[CEU][hapmap];0.90[MKK][hapmap];0.85[TSI][hapmap]
rs3772896	0.82[CEU][hapmap]
rs3821548	0.83[CEU][hapmap];0.86[GIH][hapmap];0.82[TSI][hapmap]
rs3821551	0.96[CEU][hapmap]
rs3821552	0.91[CEU][hapmap]
rs3849570	0.86[GIH][hapmap];0.82[TSI][hapmap]
rs3849571	0.83[CEU][hapmap]
rs3943556	0.95[CEU][hapmap]
rs4411908	0.82[GIH][hapmap]
rs6765917	0.88[EUR][1000 genomes]
rs6792696	0.85[EUR][1000 genomes]
rs6795133	0.95[CEU][hapmap];1.00[GIH][hapmap];0.81[MKK][hapmap];0.84[TSI][hapmap]
rs6804587	0.84[EUR][1000 genomes]
rs7620240	0.83[CEU][hapmap];0.84[GIH][hapmap];0.82[TSI][hapmap]
rs7631052	0.89[EUR][1000 genomes]
rs7634258	0.96[CEU][hapmap];1.00[GIH][hapmap];0.86[MKK][hapmap];0.85[TSI][hapmap]
rs7641973	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7648245	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9841087	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81889200-81894800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:81889400-81895800	Weak transcription	Psoas Muscle	Psoas
3	chr3:81891600-81895800	Weak transcription	Dnd41	blood

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