Variant report

Variant	rs1525620
Chromosome Location	chr7:124805279-124805280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1020629	0.91[CEU][hapmap];0.92[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs10240611	0.84[ASN][1000 genomes]
rs10500102	0.81[CEU][hapmap];0.84[CHB][hapmap];0.92[GIH][hapmap]
rs11771004	0.83[CHB][hapmap]
rs11771079	0.92[CHB][hapmap]
rs1248737	0.83[CHB][hapmap]
rs12531213	0.81[ASN][1000 genomes]
rs12531708	0.83[ASN][1000 genomes]
rs12534920	0.84[ASN][1000 genomes]
rs12535063	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12539545	0.84[ASN][1000 genomes]
rs1357971	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1454124	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1552116	0.84[CHB][hapmap]
rs1552117	0.84[CHB][hapmap]
rs17147889	0.90[GIH][hapmap]
rs17148021	0.83[ASN][1000 genomes]
rs17148035	0.82[ASN][1000 genomes]
rs28402853	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34246481	1.00[ASW][hapmap];0.91[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap];0.92[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap]
rs34974782	0.82[ASN][1000 genomes]
rs3847093	0.84[ASN][1000 genomes]
rs58160159	0.84[ASN][1000 genomes]
rs590516	0.83[ASN][1000 genomes]
rs60486828	0.87[ASN][1000 genomes]
rs612391	0.82[CHB][hapmap]
rs625037	0.81[ASN][1000 genomes]
rs627823	0.83[CHB][hapmap]
rs6466995	0.87[ASN][1000 genomes]
rs650653	0.84[CHB][hapmap]
rs651988	0.92[CHB][hapmap];0.86[CHD][hapmap];0.83[ASN][1000 genomes]
rs659269	0.91[ASN][1000 genomes]
rs663056	0.84[CHB][hapmap]
rs664062	0.92[CHB][hapmap];0.86[CHD][hapmap];0.83[ASN][1000 genomes]
rs6947036	0.82[ASN][1000 genomes]
rs6954295	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6955284	0.82[ASN][1000 genomes]
rs6965957	0.82[CHB][hapmap]
rs6968595	0.82[ASN][1000 genomes]
rs715937	0.87[ASN][1000 genomes]
rs73438500	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73440504	0.85[ASN][1000 genomes]
rs73440522	0.84[ASN][1000 genomes]
rs73440528	0.82[ASN][1000 genomes]
rs73440532	0.84[ASN][1000 genomes]
rs73440534	0.84[ASN][1000 genomes]
rs73440551	0.82[ASN][1000 genomes]
rs7783242	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7794583	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7797011	0.91[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs7800299	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs792617	0.87[ASN][1000 genomes]
rs792637	0.87[ASN][1000 genomes]
rs9785002	0.91[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap]
rs9942625	0.88[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	esv3394090	chr7:124602150-124900799	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv464708	chr7:124703756-124805279	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv608344	chr7:124703756-124805279	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv831119	chr7:124714009-124890119	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	esv2422188	chr7:124782873-125254203	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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