Variant report

Variant	rs1526504
Chromosome Location	chr1:75599640-75599641
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1007512	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10493552	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10493553	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11162513	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11162567	0.88[ASN][1000 genomes]
rs12036667	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12041465	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12563445	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12565272	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1526505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526507	0.92[ASN][1000 genomes]
rs1526513	0.90[ASN][1000 genomes]
rs17096272	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17096289	0.88[ASN][1000 genomes]
rs1852347	0.91[ASN][1000 genomes]
rs4949725	0.91[ASN][1000 genomes]
rs7520936	0.92[ASN][1000 genomes]
rs7535534	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871743	chr1:75235082-75714554	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3368999	chr1:75524762-75933220	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75596000-75600600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
2	chr1:75596400-75600200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:75598800-75603200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr1:75598800-75603600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:75599400-75599800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr1:75599400-75600000	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:75599400-75600200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
8	chr1:75599400-75600200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
9	chr1:75599400-75600200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
10	chr1:75599400-75601400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
11	chr1:75599400-75603000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr1:75599600-75599800	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:75599600-75599800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:75599600-75600000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
15	chr1:75599600-75600000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
16	chr1:75599600-75600600	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
17	chr1:75599600-75603400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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