Variant report

Variant	rs1526505
Chromosome Location	chr1:75598900-75598901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1007512	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10493552	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10493553	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11162513	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11162567	0.86[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs12036667	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12041465	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.81[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12563445	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12565272	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1526504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526507	0.92[ASN][1000 genomes]
rs1526513	0.83[CEU][hapmap];0.93[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs17096272	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17096289	0.86[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs1852347	0.91[ASN][1000 genomes]
rs4949725	0.91[ASN][1000 genomes]
rs7520936	0.92[ASN][1000 genomes]
rs7535534	0.88[ASN][1000 genomes]
rs941032	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871743	chr1:75235082-75714554	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3368999	chr1:75524762-75933220	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75596000-75600600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
2	chr1:75596400-75600200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:75597400-75599400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
4	chr1:75598000-75599000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:75598200-75599200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
6	chr1:75598600-75599400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
7	chr1:75598800-75599000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
8	chr1:75598800-75599000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
9	chr1:75598800-75599000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
10	chr1:75598800-75599000	Bivalent Enhancer	Fetal Muscle Leg	muscle
11	chr1:75598800-75599200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
12	chr1:75598800-75599600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:75598800-75603200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
14	chr1:75598800-75603600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links