Variant report

Variant	rs1527842
Chromosome Location	chr7:48673941-48673942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10268266	0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1358409	0.89[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1918583	0.94[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3915483	1.00[ASW][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4917024	0.94[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55652646	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6955686	0.80[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap]
rs7809663	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9649742	0.94[CHB][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv606894	chr7:48663637-48718598	ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48672400-48676200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:48672400-48683000	Weak transcription	Fetal Lung	lung
3	chr7:48672600-48674200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr7:48672600-48674800	Weak transcription	Fetal Heart	heart
5	chr7:48672600-48675200	Weak transcription	Left Ventricle	heart
6	chr7:48672600-48675800	Weak transcription	Esophagus	oesophagus
7	chr7:48672600-48676000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:48672600-48676000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:48672600-48676000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:48672600-48676000	Weak transcription	Right Atrium	heart
11	chr7:48672600-48676000	Weak transcription	Spleen	Spleen
12	chr7:48672600-48676800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:48672600-48677200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr7:48672600-48679600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:48672600-48688800	Weak transcription	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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