Variant report

Variant	rs1528028
Chromosome Location	chr2:182636467-182636468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:182627954..182630438-chr2:182634967..182637515,2	K562	blood:
2	chr2:182633948..182636625-chr2:182642874..182645576,3	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10190772	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs10497586	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11891680	0.83[ASN][1000 genomes]
rs11895376	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs11898530	0.83[ASN][1000 genomes]
rs11902326	0.84[ASN][1000 genomes]
rs12612058	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12618902	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12620901	0.93[CHB][hapmap];0.82[ASN][1000 genomes]
rs13387144	0.85[ASN][1000 genomes]
rs13396043	0.84[ASN][1000 genomes]
rs1343793	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs16867494	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs16867495	0.81[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs16867496	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4597474	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.94[ASN][1000 genomes]
rs57000426	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs57281910	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57971040	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs59159077	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59956987	0.83[ASN][1000 genomes]
rs60200067	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61246630	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6720578	0.85[ASN][1000 genomes]
rs7567399	0.85[ASN][1000 genomes]
rs7567560	0.85[ASN][1000 genomes]
rs7581484	0.85[ASN][1000 genomes]
rs7584725	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1001558	chr2:182590009-182732738	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182634400-182636600	Enhancers	NHEK	skin
2	chr2:182634600-182637400	Enhancers	HMEC	breast
3	chr2:182635200-182636600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:182635400-182639400	Weak transcription	Osteobl	bone
5	chr2:182635600-182639000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr2:182635600-182639200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:182635600-182639200	Weak transcription	Hela-S3	cervix
8	chr2:182636200-182636600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr2:182636200-182636600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr2:182636200-182637000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:182636200-182637400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:182636400-182636600	Enhancers	HSMM	muscle
13	chr2:182636400-182637000	Enhancers	HSMMtube	muscle
14	chr2:182636400-182639400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:182636400-182645800	Weak transcription	Pancreas	Pancrea

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