Variant report

Variant	rs1529598
Chromosome Location	chr8:10751709-10751710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10695965..10697529-chr8:10751213..10753567,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-XKR6-1	chr8:10751007-10754356	ucscGeneNc_uc003wtj_2

Variant related genes	Relation type
ENSG00000258724	Chromatin interaction
ENSG00000254093	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10903332	0.83[EUR][1000 genomes]
rs10903333	0.83[EUR][1000 genomes]
rs11250084	0.88[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11776011	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11776368	0.86[CEU][hapmap]
rs11784061	1.00[ASN][1000 genomes]
rs11784331	1.00[ASN][1000 genomes]
rs13248287	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13270870	0.87[ASN][1000 genomes]
rs13279307	1.00[ASN][1000 genomes]
rs13279922	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1430866	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs34716741	0.86[ASN][1000 genomes]
rs35888807	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4240671	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4240672	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4326350	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4840525	0.87[ASN][1000 genomes]
rs4841458	0.86[CEU][hapmap]
rs57145255	1.00[ASN][1000 genomes]
rs6985109	1.00[JPT][hapmap]
rs6985767	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6997839	0.87[ASN][1000 genomes]
rs6997997	0.87[ASN][1000 genomes]
rs71516598	0.86[ASN][1000 genomes]
rs7813037	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7821826	1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1026802	chr8:10576444-10754489	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv539469	chr8:10576444-10754489	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1017836	chr8:10591801-10803617	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1034988	chr8:10591801-10804243	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
6	nsv831232	chr8:10606053-10774948	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10720800-10756200	Weak transcription	Pancreas	Pancrea
2	chr8:10748000-10752200	Enhancers	Placenta	Placenta
3	chr8:10748800-10753000	Weak transcription	Right Atrium	heart
4	chr8:10749400-10755800	Weak transcription	Spleen	Spleen
5	chr8:10750800-10757200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr8:10751400-10752800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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