Variant report

Variant	rs1529708
Chromosome Location	chr5:145082856-145082857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145081237..145084236-chr5:145205534..145207080,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10035959	0.95[ASN][1000 genomes]
rs10035998	0.95[ASN][1000 genomes]
rs10038598	0.89[ASN][1000 genomes]
rs10041421	0.89[ASN][1000 genomes]
rs1019922	0.83[ASN][1000 genomes]
rs1019923	0.82[ASN][1000 genomes]
rs1019925	0.89[ASN][1000 genomes]
rs1019926	0.89[ASN][1000 genomes]
rs1025472	0.95[ASN][1000 genomes]
rs12518852	0.81[ASN][1000 genomes]
rs13166750	0.81[ASN][1000 genomes]
rs1347123	0.98[ASN][1000 genomes]
rs1347124	0.98[ASN][1000 genomes]
rs1368340	0.98[ASN][1000 genomes]
rs1368341	0.81[ASN][1000 genomes]
rs1368343	0.81[ASN][1000 genomes]
rs1432753	0.89[ASN][1000 genomes]
rs1433028	0.98[ASN][1000 genomes]
rs1529707	0.90[EUR][1000 genomes]
rs1619551	0.98[ASN][1000 genomes]
rs1626062	0.95[ASN][1000 genomes]
rs1626734	0.95[ASN][1000 genomes]
rs1654134	0.97[ASN][1000 genomes]
rs1654135	0.98[ASN][1000 genomes]
rs1654143	0.95[ASN][1000 genomes]
rs1654144	0.95[ASN][1000 genomes]
rs1654145	0.95[ASN][1000 genomes]
rs1654146	0.92[ASN][1000 genomes]
rs1654147	0.89[ASN][1000 genomes]
rs1654148	0.86[ASN][1000 genomes]
rs1654150	0.95[ASN][1000 genomes]
rs1654230	0.98[ASN][1000 genomes]
rs1654231	0.98[ASN][1000 genomes]
rs1654232	0.95[ASN][1000 genomes]
rs1654233	0.92[ASN][1000 genomes]
rs1654234	0.95[ASN][1000 genomes]
rs1654235	0.92[ASN][1000 genomes]
rs1654236	0.89[ASN][1000 genomes]
rs1654237	0.89[ASN][1000 genomes]
rs1654238	0.89[ASN][1000 genomes]
rs1654239	0.89[ASN][1000 genomes]
rs1654240	0.89[ASN][1000 genomes]
rs1654242	0.95[ASN][1000 genomes]
rs1654243	0.95[ASN][1000 genomes]
rs1835931	0.89[ASN][1000 genomes]
rs1897540	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1962863	0.89[ASN][1000 genomes]
rs1962864	0.89[ASN][1000 genomes]
rs1972778	0.89[ASN][1000 genomes]
rs2014625	0.89[ASN][1000 genomes]
rs2400196	0.95[ASN][1000 genomes]
rs2400197	0.89[ASN][1000 genomes]
rs2400198	0.89[ASN][1000 genomes]
rs2436416	0.95[ASN][1000 genomes]
rs28668139	0.81[EUR][1000 genomes]
rs3903516	0.81[ASN][1000 genomes]
rs4521541	0.81[ASN][1000 genomes]
rs55824632	0.85[ASN][1000 genomes]
rs6580383	0.81[ASN][1000 genomes]
rs6580384	0.81[ASN][1000 genomes]
rs6884968	0.81[ASN][1000 genomes]
rs6896903	0.81[ASN][1000 genomes]
rs7721955	0.95[ASN][1000 genomes]
rs872565	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs872566	0.98[ASN][1000 genomes]
rs872567	0.81[EUR][1000 genomes]
rs9324990	0.86[EUR][1000 genomes]
rs987806	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv462474	chr5:145068001-145143775	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv599934	chr5:145068001-145143775	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145060800-145089600	Weak transcription	Gastric	stomach
2	chr5:145066600-145084200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:145068600-145106200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr5:145075400-145090200	Weak transcription	Aorta	Aorta
5	chr5:145076600-145088200	Weak transcription	Right Ventricle	heart
6	chr5:145077000-145091000	Weak transcription	Pancreas	Pancrea
7	chr5:145082000-145106200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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