Variant report

Variant	rs1530379
Chromosome Location	chr9:102198655-102198656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102196130..102198147-chr9:102198447..102200245,2	K562	blood:
2	chr9:102196130..102198135-chr9:102198447..102201334,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1025901	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1025902	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10441760	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10441761	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10760684	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10760685	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10819666	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10819667	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10819672	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10819674	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10988816	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10988829	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12238127	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1360260	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1972233	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2416768	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4743345	0.89[ASN][1000 genomes]
rs4743347	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4743348	0.89[ASN][1000 genomes]
rs4743349	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4743353	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55750347	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57483311	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7027953	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7032399	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7032541	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7040144	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73495500	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7847405	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7857445	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7858078	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7862197	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7866560	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs878449	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs880597	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9886848	0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv527165	chr9:102194921-102214169	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv6636	chr9:102197504-102242604	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102194200-102199800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:102195400-102202800	Enhancers	NHDF-Ad	bronchial
3	chr9:102196600-102199000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:102196600-102199200	Weak transcription	HSMMtube	muscle
5	chr9:102196600-102200400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:102196800-102200800	Weak transcription	Osteobl	bone
7	chr9:102197000-102199200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr9:102197000-102200000	Weak transcription	NHEK	skin
9	chr9:102197000-102200200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:102197000-102200200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr9:102197000-102200200	Weak transcription	HMEC	breast
12	chr9:102197000-102200600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:102197000-102207600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:102197600-102199000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:102197800-102200600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:102198200-102201400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:102198400-102199200	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr9:102198600-102199200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr9:102198600-102199200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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