Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75012871..75015540-chr6:75027590..75030064,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10485384	0.90[EUR][1000 genomes]
rs12528947	0.93[AFR][1000 genomes]
rs1387417	0.88[EUR][1000 genomes]
rs1489381	0.94[EUR][1000 genomes]
rs16884555	0.90[EUR][1000 genomes]
rs1890525	0.93[EUR][1000 genomes]
rs1953177	0.90[EUR][1000 genomes]
rs2352082	0.90[EUR][1000 genomes]
rs4142493	0.93[EUR][1000 genomes]
rs4354109	0.90[EUR][1000 genomes]
rs4706579	0.95[EUR][1000 genomes]
rs4708140	0.88[EUR][1000 genomes]
rs4708145	0.95[EUR][1000 genomes]
rs4708146	0.95[EUR][1000 genomes]
rs4708147	0.95[EUR][1000 genomes]
rs56984505	0.89[EUR][1000 genomes]
rs66722506	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6917462	0.94[EUR][1000 genomes]
rs875303	0.94[EUR][1000 genomes]
rs9293961	0.90[EUR][1000 genomes]
rs9293965	0.94[EUR][1000 genomes]
rs9343134	0.95[EUR][1000 genomes]
rs9343135	0.92[EUR][1000 genomes]
rs9343139	0.93[EUR][1000 genomes]
rs9350532	0.90[EUR][1000 genomes]
rs9352088	0.90[EUR][1000 genomes]
rs9352089	0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs9352100	0.93[EUR][1000 genomes]
rs9360768	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758061	chr6:74961996-75128165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2759442	chr6:74961996-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2829863	chr6:74976178-75040446	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886165	chr6:74981125-75070742	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv7921	chr6:75029817-75031869	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75028600-75030600	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr6:75028600-75030800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:75028600-75031200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:75029200-75030000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:75029200-75030000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:75029200-75030600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:75029200-75030800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:75029400-75030200	Enhancers	Colon Smooth Muscle	Colon
9	chr6:75029400-75030600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:75029800-75030000	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search: