Variant report
| Variant | rs1532400 |
|---|---|
| Chromosome Location | chr1:152211737-152211738 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10749672 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10788829 | 0.92[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs10888469 | 0.91[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs10888474 | 0.98[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs11204940 | 0.92[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs11204950 | 0.98[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs1466758 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2036101 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs3120648 | 0.87[AFR][1000 genomes] |
| rs3120657 | 0.81[AFR][1000 genomes] |
| rs3120658 | 0.81[AFR][1000 genomes] |
| rs3126057 | 0.85[AFR][1000 genomes] |
| rs3126064 | 0.85[AFR][1000 genomes] |
| rs4333850 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4548447 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs6587655 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs7523354 | 0.81[YRI][hapmap];0.93[AFR][1000 genomes] |
| rs7533656 | 0.91[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs7534986 | 0.97[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs7550091 | 0.91[AFR][1000 genomes];0.85[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1007097 | chr1:151832796-152227977 | Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 196 gene(s) | inside rSNPs | diseases |
| 2 | nsv547853 | chr1:152008671-152236760 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 83 gene(s) | inside rSNPs | diseases |
| 3 | nsv1014095 | chr1:152104486-152454591 | Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 4 | nsv947506 | chr1:152203216-152223222 | Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:152207600-152215400 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
