Variant report

Variant	rs1533040
Chromosome Location	chr9:15638364-15638365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 281 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:263)

rs_ID	r²[population]
rs1009468	0.84[CHB][hapmap]
rs10118359	0.85[ASN][1000 genomes]
rs10121591	0.85[ASN][1000 genomes]
rs10123042	0.92[ASN][1000 genomes]
rs1039813	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1039814	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10481557	1.00[CEU][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs10733295	0.89[CEU][hapmap];0.83[CHB][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.83[TSI][hapmap];0.80[ASN][1000 genomes]
rs10738400	0.81[EUR][1000 genomes]
rs10738402	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10738403	0.81[EUR][1000 genomes]
rs10738404	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10738405	0.88[EUR][1000 genomes]
rs10738406	0.88[EUR][1000 genomes]
rs10756670	0.81[EUR][1000 genomes]
rs10756671	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs10756672	0.83[EUR][1000 genomes]
rs10756674	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10756676	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10756677	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10756678	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10756679	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs10756680	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10756686	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10756687	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10756688	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10756689	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10756690	1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10756692	0.86[EUR][1000 genomes]
rs10756693	0.85[EUR][1000 genomes]
rs10756694	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10756695	0.87[EUR][1000 genomes]
rs10756696	0.86[EUR][1000 genomes]
rs10756697	0.96[CEU][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs10756704	0.92[CEU][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap]
rs10810397	0.81[CEU][hapmap]
rs10810399	1.00[CEU][hapmap];0.91[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10810400	0.88[EUR][1000 genomes]
rs10810401	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10810402	0.96[CEU][hapmap];0.81[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs10810405	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10810407	0.88[EUR][1000 genomes]
rs10810408	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs10810409	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10810410	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10810416	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810419	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10810422	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10810424	0.87[ASN][1000 genomes]
rs10810426	0.89[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs10810427	0.89[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs10810428	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10810429	0.89[CEU][hapmap]
rs10810431	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10810432	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10810433	0.88[EUR][1000 genomes]
rs10810434	0.88[EUR][1000 genomes]
rs10810435	0.87[EUR][1000 genomes]
rs10810436	0.86[EUR][1000 genomes]
rs10810438	0.85[CEU][hapmap];0.89[CHB][hapmap]
rs10810439	1.00[CEU][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap]
rs10810440	0.85[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap]
rs10810442	0.89[CEU][hapmap];0.84[CHB][hapmap]
rs10962064	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10962065	0.81[EUR][1000 genomes]
rs10962066	1.00[CEU][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10962070	1.00[CEU][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes]
rs10962072	0.87[EUR][1000 genomes]
rs10962073	0.86[EUR][1000 genomes]
rs10962098	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10962099	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10962106	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10962110	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs10962124	0.87[EUR][1000 genomes]
rs10962126	0.89[CEU][hapmap];0.84[CHB][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];0.83[MEX][hapmap]
rs10962142	0.89[CEU][hapmap];0.87[MEX][hapmap]
rs10962147	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs10962149	0.92[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap]
rs10962151	0.92[CEU][hapmap]
rs10962152	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs10962153	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs10962157	0.92[CEU][hapmap]
rs10962158	0.92[CEU][hapmap]
rs10962170	0.84[CHB][hapmap]
rs11789538	0.82[EUR][1000 genomes]
rs11789563	0.88[EUR][1000 genomes]
rs11791627	0.86[EUR][1000 genomes]
rs11792937	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12340969	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12341679	0.85[CEU][hapmap];0.84[CHB][hapmap];0.83[GIH][hapmap];0.89[JPT][hapmap];0.87[MEX][hapmap]
rs12377371	0.85[CEU][hapmap];0.83[CHB][hapmap]
rs12685082	1.00[YRI][hapmap]
rs13291638	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13301516	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1341734	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs1355171	0.89[CEU][hapmap];0.89[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.80[TSI][hapmap];0.80[ASN][1000 genomes]
rs1355173	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs1396706	0.82[CEU][hapmap];0.84[CHB][hapmap]
rs1396707	0.96[CEU][hapmap];0.81[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs1396708	0.96[CEU][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs1509310	0.87[EUR][1000 genomes]
rs1539171	0.84[CHB][hapmap];0.85[GIH][hapmap];0.84[JPT][hapmap];0.87[MEX][hapmap]
rs1539172	0.82[MEX][hapmap]
rs1553728	0.96[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1572978	0.84[CHB][hapmap]
rs1592099	0.82[CEU][hapmap];0.87[MEX][hapmap]
rs16933350	0.80[LWK][hapmap]
rs169342	0.89[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1812686	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs183928	0.89[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1848582	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs192466	0.85[CEU][hapmap]
rs2055772	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2096121	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs2105315	0.82[CEU][hapmap]
rs2105317	0.92[CEU][hapmap]
rs2136355	0.88[EUR][1000 genomes]
rs2153725	0.84[CHB][hapmap]
rs2153726	0.84[CHB][hapmap]
rs2153727	0.84[CHB][hapmap]
rs2175080	0.85[CEU][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];0.80[TSI][hapmap]
rs2175082	0.91[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2185665	0.83[CHB][hapmap]
rs2382532	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2382534	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs2382538	0.86[EUR][1000 genomes]
rs2382553	0.84[CHB][hapmap]
rs2457265	0.80[EUR][1000 genomes]
rs2663300	0.80[EUR][1000 genomes]
rs276432	0.86[ASN][1000 genomes]
rs276433	0.86[ASN][1000 genomes]
rs276435	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs276436	0.89[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs276443	0.92[ASN][1000 genomes]
rs276448	0.89[CEU][hapmap]
rs276449	0.89[CEU][hapmap]
rs276453	0.89[CEU][hapmap]
rs276455	0.89[CEU][hapmap];0.81[CHB][hapmap];0.80[EUR][1000 genomes]
rs2821545	0.81[CEU][hapmap];0.87[GIH][hapmap];0.81[TSI][hapmap]
rs2891007	0.84[CHB][hapmap]
rs3119699	0.88[CEU][hapmap]
rs3122702	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35146544	0.80[EUR][1000 genomes]
rs3955162	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4146290	0.92[CEU][hapmap]
rs4146291	0.92[CEU][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap]
rs4281189	0.86[EUR][1000 genomes]
rs432452	0.89[CEU][hapmap];0.81[CHB][hapmap];0.81[EUR][1000 genomes]
rs433849	0.84[CEU][hapmap]
rs4339736	0.91[EUR][1000 genomes]
rs440229	0.84[EUR][1000 genomes]
rs442549	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4448380	0.93[EUR][1000 genomes]
rs451878	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4740614	0.85[CEU][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap]
rs4740615	0.82[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4740618	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4740619	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4740620	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4740621	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4740622	0.89[EUR][1000 genomes]
rs4740624	1.00[CEU][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap]
rs4741510	0.85[CEU][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs4741515	0.92[EUR][1000 genomes]
rs4741517	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4741519	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4741520	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4741527	0.86[EUR][1000 genomes]
rs4741528	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4741529	0.96[EUR][1000 genomes]
rs4741534	0.96[CEU][hapmap];0.84[CHD][hapmap];0.98[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs4741535	0.96[CEU][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs4741545	0.91[MEX][hapmap]
rs6474931	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6474942	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6474944	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6474945	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6474946	0.86[ASN][1000 genomes]
rs6474951	0.85[CEU][hapmap]
rs6474952	0.85[CEU][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];0.80[TSI][hapmap]
rs6474953	0.88[EUR][1000 genomes]
rs6474954	0.96[CEU][hapmap];0.84[CHD][hapmap];0.98[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs6474955	0.88[EUR][1000 genomes]
rs6474966	0.89[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap]
rs6474974	0.92[CEU][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap]
rs7019205	0.84[CHB][hapmap]
rs7019430	0.82[EUR][1000 genomes]
rs7019851	0.84[CHB][hapmap];0.83[JPT][hapmap];0.87[MEX][hapmap]
rs7020760	0.81[EUR][1000 genomes]
rs7021778	1.00[YRI][hapmap]
rs7023275	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7024640	0.96[CEU][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs7025669	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7030846	0.90[ASN][1000 genomes]
rs7031365	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7032457	0.84[CHB][hapmap]
rs7032634	0.84[CHB][hapmap]
rs7032755	0.92[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7032877	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7033236	0.82[EUR][1000 genomes]
rs7034484	0.88[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs7034781	0.85[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap]
rs7035048	0.91[YRI][hapmap]
rs7035863	0.92[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs7036172	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7036674	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7036875	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7042475	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7044122	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7045018	0.92[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap]
rs7046351	0.92[ASN][1000 genomes]
rs7047045	0.84[CHB][hapmap]
rs7049101	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7049176	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7389023	0.83[EUR][1000 genomes]
rs7389047	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7389629	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7467156	0.85[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap]
rs7467207	0.85[CEU][hapmap];0.83[GIH][hapmap];0.89[JPT][hapmap]
rs770524	0.88[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap]
rs7847144	0.96[CEU][hapmap];0.84[CHD][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs7848511	0.87[ASN][1000 genomes]
rs7851056	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7853744	0.84[CHB][hapmap];0.83[MEX][hapmap]
rs7854714	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7855235	0.88[EUR][1000 genomes]
rs7856657	0.83[LWK][hapmap]
rs7859780	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7860528	0.82[CEU][hapmap]
rs7860623	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7860755	0.92[CEU][hapmap]
rs7860869	0.85[CEU][hapmap];0.84[CHB][hapmap]
rs7861004	0.86[EUR][1000 genomes]
rs7863088	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7866641	0.84[CHB][hapmap];0.83[MEX][hapmap]
rs7868779	0.81[EUR][1000 genomes]
rs7869609	0.91[YRI][hapmap]
rs7869624	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs7870166	0.90[LWK][hapmap];0.91[YRI][hapmap]
rs7872912	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs7873152	0.89[CEU][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs7873776	0.92[CEU][hapmap]
rs7874533	0.82[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7875367	0.89[CEU][hapmap];0.81[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.80[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap]
rs9298738	0.84[CHB][hapmap]
rs9298739	0.81[CHB][hapmap]
rs9298740	0.85[CEU][hapmap];0.84[CHB][hapmap]
rs9298741	0.85[CEU][hapmap];0.84[CHB][hapmap]
rs9406537	0.83[CHB][hapmap];0.83[MEX][hapmap]
rs9406542	0.83[CHB][hapmap]
rs9407648	0.83[CHB][hapmap]
rs9407649	0.84[CHB][hapmap]
rs9407650	0.84[CHB][hapmap]
rs9407651	0.84[CHB][hapmap]
rs9407652	0.83[CHB][hapmap]
rs9407654	0.84[CHB][hapmap]
rs9407657	0.84[CHB][hapmap]
rs950234	0.85[CEU][hapmap]
rs954663	0.89[CEU][hapmap]
rs955369	0.92[CEU][hapmap]
rs9650677	0.81[EUR][1000 genomes]
rs9696751	0.92[EUR][1000 genomes]
rs9886779	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	esv3407839	chr9:15530438-15665653	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv892630	chr9:15554960-15694690	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv613652	chr9:15579744-15661859	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv613653	chr9:15590116-15668606	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv892631	chr9:15590116-15694690	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv613654	chr9:15601971-15638364	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv613655	chr9:15602101-15670445	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv613656	chr9:15615321-15696501	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv466262	chr9:15615321-15727518	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv613657	chr9:15615321-15727518	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv969752	chr9:15615716-15639356	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv613658	chr9:15636260-15727518	Strong transcription Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1533040	C9orf93	cis	cerebellum	SCAN
rs1533040	C9orf93	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15614400-15645000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:15636200-15640000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:15636200-15640000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links