Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1139	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12052765	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs12053119	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs12465379	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12466207	0.80[AMR][1000 genomes]
rs12467122	0.82[CEU][hapmap]
rs12472888	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12473571	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs1385972	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes]
rs16866963	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes]
rs16866968	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs16866986	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs16866987	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs16866989	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16866991	0.82[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs16866992	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs356407	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs57390308	0.89[AMR][1000 genomes]
rs58217303	0.84[AMR][1000 genomes]
rs7559882	0.83[CHB][hapmap]
rs7574345	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7592797	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes]
rs7607561	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180608600-180611200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:180608800-180610800	Active TSS	Right Atrium	heart
3	chr2:180608800-180613000	Enhancers	Fetal Lung	lung
4	chr2:180609600-180611000	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr2:180610000-180610400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr2:180610200-180610800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:180610200-180610800	Enhancers	Brain Substantia Nigra	brain
8	chr2:180610200-180611000	Active TSS	Brain Angular Gyrus	brain
9	chr2:180610200-180611000	Active TSS	Brain Cingulate Gyrus	brain
10	chr2:180610200-180611000	Active TSS	Fetal Brain Male	brain

Quick Search: